Populus trichocarpa (black cottonwood): 18107462
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Entry
18107462 CDS
T01077
Name
(RefSeq) DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1
KO
K10908
DNA-directed RNA polymerase, mitochondrial [EC:
2.7.7.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
pop03029
]
18107462
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18107462
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial RNA polymerase
18107462
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol
RPOL_N
Motif
Other DBs
NCBI-GeneID:
18107462
NCBI-ProteinID:
XP_052304330
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All DBs
Position
17:11520391..11530506
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AA seq
1030 aa
AA seq
DB search
MWRNVAKQATLKSQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSLNNTSPRLSFRAIG
EISTHEDFMGKPSFIFLRNSDSTNGNWCAGFCPRGYVSVAEAVSSTDVEDNVYGADEVQE
LLPEMRKEEEKEEHFRRRRLHANPGVGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDM
CEHKLAPNLPYMKSLFLGWFEPFRDAIAKEQELIRTGKSRQGYAPYFDLLPADKMSVIAM
HQLAAMVMTGGEHGCARVVTAACMIGDAIEQEFLLSVQVLLLFMVPGRTLNVVSVMKQIR
IHNILEKTRKKKEKTYDSKNGVEGESPAVMKEQENLRKKVTDLIKKQKLPAVRKIVKGKD
DSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTVSYENKKGA
KKYGVIQCDPLVLKGLEKTARHMVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQ
QREAVKRAPRKQLRPVFEALDTLGNTRWRVNKRVLSVVDRIWSNGGCLADLVDHSDVPLP
EKPETEDEALLKKWKWKLRGVKKENKERHAQRCDIELKLAVARKMKDEEGFYYPHNIDFR
GRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHIANLFAGGVDKLSYEGRIA
FTENHLDDIFDSADKPLDGKRWWLHAEDPFQFLAVCINLTEALRSSSPETYISHIPVHQD
GSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMRRDAQKDPDVFPDAL
RAKELINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGITEESDIFGCSCYAAKVT
LTALGEMFEAARSIMNWLGDCAKIIASENEPVRWTTPLGLPVVQPYRKLGTRSIKTSLQV
LILQKETDKVMVQRQRTAFPPNFVHSLDSSHMMMTAVACKGAGLNFAGVHDSYWTHACDV
DEMNRILREKFVELYETPILENLLESFEKSFPTLSFPPLPDRGDFELREVLESPYFFWSV
SFDSALNAVV
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtggagaaacgtcgcaaaacaagccactttgaaatcccaatcaaagtccctcaatttc
ccttcatttccaagaacttacagctttttaggagcctctaaagaacccatcttttttgag
aaactgaagttccattcgcttaataacacaagtccacgactgagttttcgagcaattggc
gaaatatcaacccatgaagattttatgggaaaacccagttttatttttttgagaaatagt
gatagtactaatgggaattggtgtgctggattttgtccaagagggtatgtgagtgtagct
gaggcagtgtcatcaacagatgttgaagataatgtgtatggtgcggatgaagtgcaagaa
ttgctgccagaaatgaggaaagaagaggagaaagaggagcactttaggaggaggaggcta
catgctaaccctggagtagggtcaaggaagcatagggtcttaaggagaaggcaagtgaag
attgaggcggaagcatgggaactggcaacgaaagaatataaggagcttttgaaggatatg
tgtgagcataagttggctcctaatttgccatatatgaagagtttgttccttggttggttt
gagccttttagagacgcaattgcgaaagagcaggagttgattagaacggggaagagtagg
cagggttatgctccgtattttgatctgttgccagctgacaagatgtctgttattgcaatg
catcaactcgcagcaatggtaatgacaggtggggaacatggatgtgcaagagttgtgact
gctgcttgtatgattggtgatgcaattgagcaggagtttttactttccgtccaagttctt
ctgctgttcatggttccagggaggacactaaatgtagtttctgtgatgaaacagattaga
atacacaatatcttggagaaaacaaggaagaaaaaggaaaagacttatgatagcaagaat
ggtgtagaaggtgaatcccctgctgtcatgaaggaacaagaaaacctaagaaaaaaggtc
actgatttgattaaaaaacaaaagctgccagctgtgaggaagattgtgaaggggaaggat
gattcaaaaccatggaatgcagatgctagggctaaggttggaagccgtctaattgaattg
ctgttacaaacagcttatatacagcctccctgtgatcagttagctgatagtccatctgaa
cctcgacctgcatttgtacatacattcagaactgtgtcatatgaaaataagaagggcgcg
aaaaaatatggtgttattcaatgtgacccactagtcctcaaaggcctagagaaaactgct
aggcacatggtgattccttatatgccaatgttggtgccaccacttagatggagaggttat
gataaaggagctcacttgttcttaccatcctatgtcatgcggatacatggtgctaaacag
caacgtgaagcagttaagagggcacctaggaagcagctacgaccagtttttgaggccctg
gatacgctagggaataccagatggagggtaaataagagggtacttagtgttgttgataga
atatggagtaatggaggctgtcttgctgatttagtagaccacagtgatgttcctttacct
gagaagccagaaacagaagatgaagcactacttaagaagtggaagtggaaactcagagga
gtgaaaaaagagaacaaggaaagacatgcacagcgttgtgacatagaacttaaacttgct
gtagcacggaagatgaaagatgaagagggtttctattatccacacaatattgactttcgt
gggcgtgcctaccccatgcacccatacttaaaccatcttggatcagatctgtgccggggg
attttggagttcgcagagggacgccctcttggaaagtcaggcttacgctggctgaagata
cacattgcaaatttatttgctggtggtgtagacaagctatcttatgagggacggatagct
tttactgagaatcaccttgatgatatatttgattccgcagacaaaccacttgacggaaag
cgttggtggttgcatgcagaagatccatttcagttcttggctgtgtgcattaacctaact
gaagctttgagaagctcctcgccagaaacatatatttcacatattcctgttcatcaggat
ggttcctgcaatggcctacaacactacgctgcacttggaagagacaagttgggagcagct
gctgttaatctagttgcaggagagaagcctgcagatgtctactcgggaatagctgctaga
gtacttgatatcatgcggagggatgcacagaaagatccagatgtttttcctgatgcattg
cgtgcaaaagaattaattaaccaggtggataggaaattggtgaaacagacagtgatgaca
tctgtatatggtgtaacttacattggtgctagagaccagatcaaaaggaggttaaaggaa
cgtggtatcacagaggagtcagatatctttggttgttcttgctatgctgcaaaggtaacc
ttaactgccttaggagagatgtttgaagctgcacgaagtatcatgaactggcttggggat
tgtgcaaagattatcgcatctgaaaatgagccagtgcggtggacaactcccctaggactt
cctgttgtacaaccttatcgtaaattagggacgcgaagtatcaaaacttccctacaggtt
ttaatactacaaaaagaaactgacaaggttatggtccaacgacagagaacagctttccca
ccaaattttgttcattcccttgatagttctcatatgatgatgactgcagttgcctgcaaa
ggggcaggcttaaactttgcaggagttcacgattcatattggacgcatgcatgtgatgtg
gatgaaatgaacaggatactgagggaaaagtttgttgaactctatgaaacacctatattg
gagaatttgttggagagctttgaaaagtcttttcccacgttgtcttttccgcctttgcct
gaccggggagactttgagctgagggaagtgttggaatcaccttatttcttttggtctgtg
agttttgactcagctctgaatgctgttgtatag
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