Populus trichocarpa (black cottonwood): 18107495
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Entry
18107495 CDS
T01077
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
pop04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18107495
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
18107495
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
18107495
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18107495
03036 Chromosome and associated proteins [BR:
pop03036
]
18107495
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
18107495
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
18107495
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
18107495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
Sec7-like_HUS
Motif
Other DBs
NCBI-GeneID:
18107495
NCBI-ProteinID:
XP_006371724
LinkDB
All DBs
Position
18:complement(2603421..2608963)
Genome browser
AA seq
499 aa
AA seq
DB search
MLRQILSKLPRKSSKTDSAESARLESPVTQQISNGSSAGSGKSSNGPKRTSSVVFPASVV
AGIEPLVPFKDVPSAEKMNLFVSKVSLCCVTFDFSDSSKNTLEKDVKRQTLLELVDFVAA
GSMKFSEPAILAMCRMCAVNLFRVFPPNYRSNSSSIGENDDNDDPMFDPAWPHLQIVYDL
LLRFINSTCLDAKVAKKYIDHSFILRLLDLFDTEDPRERECLKAILHRVYGKFMVHRPFI
RKSLSNIFYRFVFETEKHNGIAELLEIFGSIISGFAMPLKEEHKIFLWRVLIPLHKPKSV
GVYFQQLSYCVVQFIEKEPRLASMVIKGILKYWPITNSQKEVMFLGELEEILEAISMVEF
QKVMVPLFWRIGCCINSLHFQVAERALFLWNNDQIVNLIAHNRPVILPIIFPALEKNAHD
HWNQGVLNLTLNVRKMFSEMDDALYLACLDQFREDEERQSVLAEQRKEAWQRLEYAASLK
PITGNTAVLVTPLATSIAC
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggcaaatcttgagtaagcttccaagaaaatcttcaaaaactgactcagctgag
tcagctcggcttgagtctccagttactcagcagatatccaatggctcaagtgcaggttcg
gggaagtcatccaatggtccaaaaagaacgtcttctgttgtatttccagctagtgtggtt
gctgggattgagccacttgtgccattcaaagacgtgcctagtgcagagaagatgaatctc
tttgtgagcaaagtaagcctgtgttgcgtaacttttgatttcagtgactcaagtaagaat
acacttgaaaaggatgtaaagagacagactttgcttgaacttgttgattttgtggctgct
gggtctatgaaatttagtgaacctgccattttagctatgtgtagaatgtgcgctgttaat
ttgtttagggtgtttcctccgaattataggtctaattcgagtagcattggcgagaatgat
gataatgatgacccaatgttcgatcctgcgtggcctcatctgcaaattgtgtatgatttg
ttgcttagattcatcaattctacgtgcttagatgcgaaagttgctaagaagtacatagac
cattcgtttatattgcggctgcttgatttgtttgacacggaggatccaagagaaagggag
tgcttaaaggctatattgcacagggtttatgggaagtttatggtgcacaggccatttatt
cgaaagtctctgagcaatatattctatagatttgtgtttgagactgagaagcataatggg
attgcagagttgttggagatttttgggagtataatcagtgggtttgccatgcctttgaaa
gaggagcacaagattttcttgtggagggttttgattcctctgcataagccgaagtctgtg
ggagtttactttcagcagttgtcatattgtgtggtacaatttattgagaaggagcccagg
ttggcgagcatggtgataaaggggatactgaaatactggccaataactaatagccagaag
gaggtaatgttcctgggtgagttggaagagattttggaagcaattagcatggtggagttt
caaaaggtcatggttccattgttctggcggattggatgctgcattaatagtctccacttc
caggtggctgaaagagccctcttcttatggaacaatgaccaaattgtcaacttgattgct
cacaataggcctgtgattctgcccatcatatttccagcattagaaaagaatgcccatgac
cattggaaccaaggggtgctcaatttaactctaaacgtcaggaagatgttctcagagatg
gacgatgcattgtacctggcctgccttgatcagttcagggaggatgaagaaaggcaaagc
gtattggctgagcagcggaaggaagcatggcagcggctggagtatgctgccagtctcaag
ccaataactggaaacacagccgttttggtaactcctttggcgacctcaattgcctgttaa
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