KEGG   Populus trichocarpa (black cottonwood): 18107620
Entry
18107620          CDS       T01077                                 
Name
(RefSeq) ras-related protein RHN1 isoform X1
  KO
K07887  Ras-related protein Rab-5A
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04144  Endocytosis
pop04145  Phagosome
pop04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    18107620
   04145 Phagosome
    18107620
   04148 Efferocytosis
    18107620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    18107620
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    18107620
   04031 GTP-binding proteins [BR:pop04031]
    18107620
Membrane trafficking [BR:pop04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    18107620
 Endosome - Lysosome transport
    18107620
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   18107620
  Exosomal proteins of other body fluids (saliva and urine)
   18107620
  Exosomal proteins of colorectal cancer cells
   18107620
  Exosomal proteins of bladder cancer cells
   18107620
GTP-binding proteins [BR:pop04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    18107620
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU Gtr1_RagA RsgA_GTPase AAA_24 TsaE AAA_16 ATPase MMR_HSR1 SRPRB PduV-EutP Imm63
Other DBs
NCBI-GeneID: 18107620
NCBI-ProteinID: XP_006371898
LinkDB
Position
18:9702485..9711062
AA seq 199 aa
MARTGSNNIQAKLVLLGDMGTGKTSLVLRFVKGQFLEFQESTIGAAFFTQVLSLNEATIK
FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVTELQRQGNPNLIMFL
VGNKVDLQQKRKVGIEEGEQYAKENGMVFLETSAKTAQNVNELFYEIAKRLAKKAPSRPI
GMKLHRRPQETRRRMFCCS
NT seq 600 nt   +upstreamnt  +downstreamnt
atggcaaggacaggaagcaataacatacaggccaagctggtgctcctcggggacatgggg
accgggaagacaagtttggtactgaggtttgtcaaggggcaatttttggagttccaggaa
tcaacaattggagcggcctttttcactcaagttttgtcattgaatgaggcaactattaag
tttgatatatgggacacagctgggcaggaacggtaccatagcttggcaccaatgtactat
cgcggtgccgctgcggccgttgtggtatacgatatcacaagcatggattcatttgaacga
gctaaaaagtgggttactgaattgcaaagacaaggaaatccgaatctgataatgttctta
gtaggcaacaaggttgacttgcaacagaagagaaaagttggcatcgaggaaggtgagcag
tatgctaaagaaaatggaatggtatttcttgaaacatctgcgaaaaccgcccagaatgtg
aacgagcttttttacgaaatagctaagagattggccaaaaaagccccttcacgtccaatc
ggaatgaaattgcataggagacctcaagaaactagaagaagaatgttttgttgctcctga

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