Populus trichocarpa (black cottonwood): 18107675
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Entry
18107675 CDS
T01077
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18107675
03083 Polycomb repressive complex
18107675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18107675
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
18107675
Histone modification proteins
HAT complexes
HATB complex
18107675
HDAC complexes
Sin3A-HDAC complex
18107675
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
18107675
PRC2.2
18107675
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
18107675
Heterochromatin formation proteins
Other heterochromatin formation proteins
18107675
Chromatin remodeling factors
NuRD complex
18107675
NuRF complex
18107675
NuRF complex (fruit fly)
18107675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML
EIF3I
WDR55
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
DUF3798
Motif
Other DBs
NCBI-GeneID:
18107675
NCBI-ProteinID:
XP_024446454
LinkDB
All DBs
Position
18:8234099..8241657
Genome browser
AA seq
503 aa
AA seq
DB search
MEPAATTAQVPKKRGRKPKPKEDQQQQQQQQQQQSAGARMKEGRKAQQPSIDDKYTQWKS
LVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCDVV
KSRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWD
VEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKLVVLWSIQDHI
TSSASDPATKSPGSGGSIIKKTGDGSDKATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQE
FCSVGDDSCLILWDARAGTSPAIKVERAHNADLHCVDWNPQDDNLILTGSADTSVCMFDR
RNLTSNGVGLPVYKFEGHKAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKKTERPT
RAPSSPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYR
PEDEVLAELEKFKSHVVSCASKP
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgctgccactactgctcaagtgccaaagaagagaggccgaaaaccgaagccc
aaagaagatcaacagcagcagcagcagcagcagcagcagcaaagtgctggtgcccgaatg
aaagagggaaggaaggcacagcaaccctctattgatgacaagtacactcagtggaagtct
ttggttcctgttctttatgactggctagccaatcacaacctcgtctggccatctctctct
tgccggtggggcccgcagcttgagcaagctacttacaagaatcgccagcgcctctatctc
tccgagcagactgatggtagtgttccaaatactttggtcattgcaaattgtgatgttgtc
aagtctagagttgctgctgcggaacacatatctcagtttaacgaagaagcacgctctcca
tttgttaagaagtacaagaccatcatacatcctggagaggtaaacagaatcagagaactc
ccccagaatagtaagatagtggctactcatactgacagccctgatgttcttatatgggat
gttgaagcacagcctaaccgacatgctgttcttggagctacaaattctcgtccagatttg
attttgactggacatcaagacaatgctgagtttgcccttgcaatgtgcccaactgaaccc
tatgtgctttctggagggaaggacaagttggtagttttgtggagtatccaggaccatata
acatcatctgcctctgatccagccactaagtctccaggatctggtggatcaatcattaaa
aagactggggatggcagtgataaagccactgatggcccttctgttggaccacgaggtatc
taccaagggcatgaggatacagttgaagacgtggcattctgtccatccagtgcgcaggag
ttttgtagtgtaggagatgattcttgccttatattatgggatgctagagctggtactagc
ccagctataaaggttgaaagggcacataatgctgatcttcactgtgttgattggaatcct
caagatgataatctcattttaactgggtctgcagatacttctgtttgcatgtttgatcga
aggaatctcacttctaatggagttggtttgcctgtctataaatttgagggtcacaaagct
gctgttctctgtgtacagtggtctccagataaggcatctgtttttgggagttctgcggag
gatggtctcttaaatatttgggattatgagaaggttggcaaaaagacagagcgtccgact
agagctccaagttctcctgcaggattgtttttccagcatgctgggcacagggataaagtt
gttgatttccattggaatgcatctgatccttggacggtggttagtgtctctgatgactgt
gataccactggcgggggagggacactgcagatatggcgcatgagtgatttgatctacagg
ccagaagatgaggttttggcagagcttgagaagttcaagtcacatgtggtttcctgtgct
tcgaagccttga
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