Populus trichocarpa (black cottonwood): 18107702
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Entry
18107702 CDS
T01077
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18107702
03420 Nucleotide excision repair
18107702
03430 Mismatch repair
18107702
03440 Homologous recombination
18107702
03460 Fanconi anemia pathway
18107702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18107702
03032 DNA replication proteins [BR:
pop03032
]
18107702
03400 DNA repair and recombination proteins [BR:
pop03400
]
18107702
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
18107702
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
18107702
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
18107702
MMR (mismatch excision repair)
18107702
DSBR (double strand breaks repair)
HR (homologous recombination)
18107702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
18107702
NCBI-ProteinID:
XP_006372003
UniProt:
U5FFY1
LinkDB
All DBs
Position
18:complement(7801898..7804755)
Genome browser
AA seq
670 aa
AA seq
DB search
MPVNLTPNAIAMINGGDVNLKPLVQVLDIKQMGSAQERFRLLVSDSVLTQHAMLGTQLND
RVKTGLVKKGSVIQLIDYICSQVQKRKIIVVLNLETIIPDCEIIGNPKMVSDAPAQKALP
NTDSMQSSMVDYNNPSSQSHGSNMHSIRPALSSQNHGGNMQSFRPTSSTQNQGSKMRSFQ
PALGAQNYGNDVQSFRPTVQPPYQPPPSYRNHGAVMKNEAPARIIPINALNPYQGRWAIK
ARITAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDVVEVGKVYLISK
GSLKPAQKNFNHLKNDWEIFLEATSTVDPCPEEDGSIPQQQFSFKPISEIEIAENNSIFD
VIGVVISVNPSVPILRKNGMETQRRILNLKDGSGWTVELTLWGDFCNKEGQKLQEMVDSG
FFPILAVKAGKVSDFNGKSLGTISSTQLLINPDIPEAHAAKDWFDRGGRDVASMSISKDI
AQGGPKNEVRKTVSQVKLEGLGRSDKPDWATVRASVSFIKTDTFCYTACPLMIGDRQCNK
KVTRSGNSRWQCDRCNQEFDDCDYRYLLQVQIQDHTGLTWATAFQESGEEILGYPAKELY
LLKYESNDDTRFADIIRSRLFYQYIFKLKIKEEMYGDERRVKITIFKADKVSYSSESRYM
LDLISKVRTY
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgaatctgacgccgaatgcaattgcgatgataaacggcggcgatgtgaacttg
aagccgctagttcaggttttggatataaaacagatgggaagcgcgcaggagaggttcagg
ctcctcgtctctgattccgttttgactcagcacgccatgctcggtactcagctcaatgac
cgagtcaagactggccttgtcaagaaaggatctgtcattcaattgatcgattacatttgc
agccaagttcaaaagcgcaagattattgttgtgctcaacttggaaactataataccagac
tgtgaaataattggaaatccaaaaatggtctctgatgctcctgctcagaaggcattgcct
aataccgactcaatgcagtcatcaatggttgattataacaatccgagttctcaaagtcat
ggaagtaatatgcacagcatcaggcctgctttgagcagccaaaatcatggtggaaatatg
caaagtttccggcccacttcaagtactcaaaatcagggcagtaaaatgaggagtttccag
cctgctttgggtgcccaaaattatggtaatgatgtgcagagttttcgaccgacagttcaa
cctccataccaaccccctccaagttacagaaatcatggtgcagttatgaagaatgaggca
ccagcacggataattcctattaatgctttgaatccttaccagggacgctgggctatcaaa
gccagaataactgctaaaggggatcttcgccgctataataatgctcggggggatgggaag
gtcttttcctttgatcttcttgattctgatggaggtgaaatacgagtgacctgcttcaat
gctgttgttgaccgcttctacgatgttgttgaagttggtaaggtttatctgatttcaaag
ggtagcttaaaacctgctcagaagaatttcaaccacctgaagaatgactgggagatattt
ttggaggcaacttcaactgtggatccttgccctgaagaagatggttctataccacaacag
caattctccttcaaacccattagtgaaattgagattgctgagaacaattccatatttgat
gtaattggtgttgtgatatccgttaacccttcagttcctatattgagaaagaatggtatg
gaaactcaaagaagaattctgaatctgaaggatggttctggttggacagttgagctaacc
ctttggggagatttctgcaacaaggaaggtcaaaagctgcaagagatggttgattctggg
ttttttcccattttagctgtcaaagctgggaaggttagtgacttcaatggaaaatctctg
ggaacaatttcttctactcagctcttgataaatccagatattcccgaggctcatgctgcg
aaagactggtttgatcgagggggccgtgatgttgcttccatgtctatttccaaagacatt
gcgcaaggaggacccaaaaacgaggttcgcaaaactgtgtcccaggtcaagcttgaaggt
cttggaagatcagataagcctgattgggccactgtgagggcaagcgtaagttttatcaaa
acagatacattctgttacacagcctgccctttgatgattggagatagacagtgtaacaag
aaagtgacaagatccggaaactcaagatggcagtgcgatagatgcaatcaagaatttgac
gactgtgattataggtatcttcttcaagttcagattcaggaccacacaggattgacttgg
gcaacagcattccaggagtctggggaggagatattgggttacccagcaaaggaattgtac
ttgttgaagtatgaatccaatgatgataccagatttgcagacataatcaggagccgactc
ttttaccagtatattttcaagctcaagatcaaagaggaaatgtatggggatgaacgaagg
gtgaagataacaatttttaaggctgacaaggtaagctattcttcagagagcagatacatg
cttgatttgatttcaaaagttcgtacatattga
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