Populus trichocarpa (black cottonwood): 18107811
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Entry
18107811 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18107811
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18107811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18107811
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18107811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_10
TPR_1
TPR_12
TPR_MalT
TPR_8
SRP_TPR_like
ARM_TT21
TPR_9
TPR_19
ANAPC3
Motif
Other DBs
NCBI-GeneID:
18107811
NCBI-ProteinID:
XP_006372156
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Position
18:complement(13733829..13740954)
Genome browser
AA seq
861 aa
AA seq
DB search
MDARDSTSNRDVSSSPGGSGTTTGGGGGEDDPILSVTAALAKDAWFHFNSRRFNECLEVL
YQLKQKKEDDPKVLHNIAIAEYCRDGYPDPKKLLEILNNIERKSEELAHASGKQVETVSN
PGNKVVSGSKGSGATVHQASATNSLSVADMDEFDPAVARLNIAIIWYHLHEYSKALSVLE
PLYHNIEPIEERTALHVCLLLLDVALACQDASKSADVLLYLEKAFGFGSVGQGDNGSAAQ
QQSTNLVAKSFSVPSSSSGMDANSDLAPSENALENSLSRTLSDETLEYESMFSLDISGQN
LARPVGLSSSNDLSRTPIDRSFSPSEMKLKLHIYKVQFLLLTRNLKQAKREVKLAINIAR
VRDSPMALLLKSQLEYARGNYRKAIKLLMASSNRAEMGISSMFNNLGCIYYQLGKYHSAT
VLFSKALASSSSLWKDKPRKLLTFSQDKSLLIVYNCGVQHLACGKPLLAARCFEKASLVF
YNQPLLWLRLAECCLMALEKGLLKAGRVPSDKSDVTVHVFGKGKWRHLAIENGISRNGYV
DSVEKEDLFLGSDGQPKLSMSLARQCLRNALHLLDYSELNHLKPGLPSNISLDENELSEE
GSMKSSNHKNLTGLDSKASTVGLGQVNANGDAKEQKGGTSQEIMQNSISFHEDIRRRENQ
MIKQALLANLAYVELELENPEKALSNARSLLELPVCSRIYIFLGHVYAAEALCLLDKPKE
AAEHLSIYLSGGNNVGLPFSQDDYVQWRVEKAFDYEELNGGSITAKNSSPDESQGIVFLN
PEEACGTLYANFAAMYAAQGDLERAHHFVTQALSLVPNRPEATLTAVYVDLMLGNSQAAV
AKLKQCSRVRFLPSDVQLNKC
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggacgcacgagattccacatcgaaccgagacgtctcatcgagccccggtggcagcggc
accaccaccggcggtggaggaggagaagacgaccctatcctttccgtcaccgccgctctc
gccaaagacgcttggtttcacttcaactctcgccggttcaatgagtgcctcgaggttctg
taccagctaaagcagaaaaaagaagacgatccgaaggtactacataatattgcaattgcg
gagtattgtcgagatggttatccagatccaaagaagttgcttgaaatacttaataacatt
gagaggaaaagtgaagagcttgctcacgcctcaggaaagcaggtagagactgttagcaat
cctgggaacaaagttgtgtcagggtctaaaggaagtggtgcaacagtgcaccaagcatct
gccacgaacagcttgtctgttgctgacatggatgaatttgacccagctgtagcaaggcta
aacattgcaatcatttggtaccatcttcatgaatattcaaaggcattatcggttctagaa
cctttgtatcacaatatcgaacctatagaggagagaactgctcttcatgtctgccttttg
ttgctagatgttgcacttgcctgccaggatgcatctaaatctgctgatgtattactatat
ctagaaaaagcgtttggctttggttctgtgggtcaaggtgataatgggagcgcagcacag
caacaatcgacaaatctagttgcaaaatctttctctgttcctagtagttcatcagggatg
gatgctaattcagatttagctcctagtgagaatgctttggaaaattctttatcgagaact
ctatcagacgagacacttgagtatgaatcaatgttctcactcgacataagtgggcaaaac
ttagcaaggcctgtgggtctttcatcttcaaatgacctttcaaggaccccaatcgatagg
tctttttctccttctgaaatgaagcttaagttgcacatttacaaggttcaatttctacta
ctcaccaggaatttgaaacaagcaaagcgtgaagtcaagcttgctatcaacattgcacgt
gtgagggactcgcccatggctctcctcttgaaatctcagcttgaatatgctcgtggtaac
taccgtaaggccattaagctgttaatggcatcaagtaatcgggcagagatggggatttca
agcatgttcaacaaccttgggtgcatctactatcagcttgggaaataccattcagcaact
gtgctcttttccaaggcactggccagtagttcatctctttggaaggacaagccacgaaag
ttgttaactttttcacaggataaatctctcctcattgtatataactgtggagtgcagcac
ttggcttgtgggaaacccttactggctgctcgctgttttgaaaaagcaagtttagttttc
tacaaccagcctttattgtggctccggcttgctgaatgctgcttgatggctttggagaag
ggacttctaaaagctggtcgggttccatcagacaagtcagatgttactgttcatgttttc
ggcaagggaaaatggaggcatcttgcaattgaaaacggtatttcaagaaacggatatgtg
gattctgttgaaaaggaagatttgtttttgggtagtgatggccaaccaaagctctccatg
tcccttgctcggcagtgtctccgcaatgctctgcatttactggattactcggaattaaat
catttgaagcctggtttgccttctaatatatccttggatgaaaatgaactgagcgaagaa
ggatctatgaagagttcaaaccacaagaatttaaccggccttgattccaaagcatctact
gtaggcttaggtcaagttaatgctaacggggatgcaaaagaacagaagggagggacaagt
caggagatcatgcagaactctatctctttccatgaagatattcgcaggagagaaaatcag
atgatcaagcaagcgcttctcgctaacttagcatatgtagagttggaattggaaaatcct
gagaaggccttgtcaaatgcaaggtctctcttggaacttccagtatgttcgagaatttat
atttttctgggtcatgtgtatgcagctgaggctctctgcttgctggacaagcccaaggaa
gctgctgagcatttgtcaatttatttgtctggaggaaataatgtggggttgccctttagc
caggatgactatgtgcaatggcgagtggaaaaagcttttgattatgaagagttaaatgga
ggatcaatcactgcaaagaattcctcccctgatgaatcacaaggtatcgtgttcctcaat
cccgaagaggcatgcggaaccctttacgcaaattttgcagccatgtatgcagcacagggt
gatcttgagcgagcccaccatttcgtgacacaagctttatccctcgtacctaatcgtcca
gaagctactctgacagcagtttacgttgatcttatgctcggtaactcacaggcagcggtt
gccaagttaaaacaatgtagtcgggtcagatttctcccaagtgatgtacaattgaataag
tgttga
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