Populus trichocarpa (black cottonwood): 18107886
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Entry
18107886 CDS
T01077
Name
(RefSeq) YTH domain-containing protein ECT1 isoform X1
KO
K20102
YTH domain-containing family protein
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18107886
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18107886
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
18107886
NCBI-ProteinID:
XP_024446346
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All DBs
Position
18:complement(16091407..16096428)
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AA seq
637 aa
AA seq
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MDENQHRLSPSPGETLTNRHNSTMDQSLSADDERIVSANPPSAESAIIKRPQSSLTAPPP
PDLSIVPPPSPQFNVYDYSSHDQAMPPPYAGYGHGTGVWDGYSPHHHLNAADGLHLSSVI
YNDNQSLTFHSGYGFNPDMGYGQYSPVATPLTPIVLDGQLYSPQQIPFSPFYNPNMPSSG
PLGSSELTSSESNGENSFFGPGSGYMVQYGSFGGGNMPGAPGSGSLTSASAYPQPMGILG
PYEHHAAQGYQQRPLHGYGYTSTSSVGHYSHGGSYQSTGFGGGSISYAGANDRTQVGFDK
GRRRERDQGSIYSSNDLLGFDRNRGPRASKLKGKHTTEQLSSYGKSEGNSASSGVQLDLY
NRPVFVTDYKNAKFFIIKSFSEDNVHKSIKYSIWASTPHGNKKIDAAYREAKEKEGNCPV
FLLFSVNASGQFCGVAEMVGPVDFEKDADYWQQDRWNGQFPVQWHIIKDVPNSRFRHILL
ENNDHKPVTHSRDSQEVKLEQGIEMLKIFKDYDAPTSIIDDFGFYDQCERALKERKAIQQ
PSLKVDGPGLLADDTINQISDSFVQSLQLDDVNKELAAREEVVSLRPGMEVLPAINCNTS
AELANDSNIEVSKAEDSNNHNLSPALKSKEGSHKYQD
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaatcaacatcgtctttcaccctcacctggagaaacacttactaatcgccat
aattctaccatggaccagtcgctctcggcggatgatgagaggattgtttcagccaatcct
ccttctgcggaatcagccattataaaacgcccccaatcttctttgactgcacctcctcct
ccggatcttagcattgttccgccgccgtcgccgcagttcaatgtttatgattattcctcg
catgaccaggcaatgccaccaccttatgccggttatggccatggcactggtgtttgggat
gggtattctccacatcatcatcttaatgcggccgatggattgcatttatcatcggttatc
tacaatgataatcaatctcttacgtttcattctggatatggctttaatcctgatatggga
tacggccaatattctccagttgctacacctctaactcctatagtactggatggccagcta
tactccccacagcagattccattttcaccattttacaatccaaatatgccatcgtcaggt
cctctaggctcatcagagctaacatcatcggaaagcaatggtgagaactccttttttgga
ccagggtcaggttacatggtacagtatgggtcatttggtggggggaatatgcctggggct
cctggctctggttctttaacatctgcatctgcttatcctcaaccaatgggcatacttggg
ccatatgagcaccatgctgcacagggttatcagcaaagaccattgcatggatatggatat
acatcaacttcctctgttggacattactcgcatggtggctcttatcagagcactggtttt
ggcggtggttcaatttcttatgcaggggctaatgaccggacacaagttggatttgataag
ggtaggagaagagagagagatcagggttcaatttattcttctaatgatctgcttggtttt
gaccgtaatcgaggaccaagggcttcaaagcttaagggcaagcacaccactgaacagctt
tcctcctatggtaaaagcgaaggcaattctgctagctctggggttcagcttgatttatat
aaccggccagtttttgtcactgattacaagaatgccaagttcttcataatcaagtctttc
agtgaggataatgttcataaaagtattaaatatagtatttgggcaagcacgccgcatggg
aacaaaaaaattgatgctgcgtatcgtgaagcaaaggaaaaggaaggaaactgtccagtc
tttctcttgttttcggtcaatgcaagtggacagttctgtggagtagcggaaatggttgga
cctgtagattttgagaaggatgctgattattggcagcaagatagatggaacggccagttc
ccagtccagtggcatattatcaaagatgttcccaacagtcgtttccggcacatactactt
gaaaacaatgatcacaagcctgttactcatagtcgagattcacaagaggtgaaactagaa
cagggtattgagatgttgaaaattttcaaggattatgatgcacctacatctatcatcgat
gattttggattttatgatcaatgtgagagagctttgaaggaaaggaaggccatacaacaa
cctagtttgaaagtagatggtccaggtttgcttgctgatgataccataaatcaaatatct
gatagttttgtgcaatctctccagttggatgatgttaataaagaactggctgccagagaa
gaggttgttagtttaagacctggtatggaggttttaccggctattaattgcaatacttct
gcggaacttgctaatgattcaaacattgaggtttcaaaagccgaagattccaacaaccat
aacttgtctcctgctttaaagtcgaaagagggcagccacaaataccaggattaa
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