Populus trichocarpa (black cottonwood): 18108006
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Entry
18108006 CDS
T01077
Name
(RefSeq) protein transport protein SEC23
KO
K14006
protein transport protein SEC23
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18108006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18108006
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
18108006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
Gelsolin
zf-Sec23_Sec24
Vps36-NZF-N
VWA
Motif
Other DBs
NCBI-GeneID:
18108006
NCBI-ProteinID:
XP_006370915
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All DBs
Position
19:902857..911073
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AA seq
777 aa
AA seq
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MSEIPNADPEGIDSVRMTWNNWPRTKVEASKCVIPLAASISPIRSNPEIPTLPYLPLRCK
TCTSIMNCFSRVDFTAKIWICPFCFQRNHFPPHYSMISETNLPAELYSQYTTIEYTIGDK
NHNPVGEFDVESAFVFVLDTCMIEEEFEYVKSEVKRAIGLLPENAMVGFVTFGTQVQVHE
LGFSDMSKVYVFRGTKEISKDQIMEQLGIGGAGRRNVPGGAVGVGGYQQQRGMPMQNSGV
SRFLLPASDCEFTLNSLLDELQTDQWPVAPGNRPSRCTGVALSVAAGLLGACLPGTGARI
VALVGGPCTEGPGAIISKDLSDPVRSHKDLDKDAAPYFKKAVKFYDSLAKQLVSQGHVLD
LFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFKDSFKRVFDSGEKSLGLCFNGTLE
INCSKDIKIQGIIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSSCFTVFFDISSSE
KSNAPGSANPQLYLQFLTSYQNPEGLTLLRVTTVTRRWVDSAVNSEELVQGFDQETAAVV
MARFTSLKMESEEGFDATRWLDRNLIRFCSKFGEYRKDDPSSFTLNSFFSFFPQFMFNLR
RSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIGAD
RILLLDSYFSVVVFHGMTIAQWRNLGYQNQPEHQVFAQLLQAPKDDAQAIIHERFPVPRL
VVCDQHGSQARFLLAKLNPSATYNNANEMAAGSDIIFTDDVSLQVFFEHLQRLAVQS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaatcccaaacgcagatccagaaggcattgattcagtccgtatgacatggaac
aactggcccagaaccaaagtcgaagcttccaaatgcgtcatccctttagccgcatcaatc
tcccctattcgttctaacccagaaatcccaactctcccttaccttcctctccgttgcaaa
acctgcacatccatcatgaattgcttctcgcgcgttgatttcaccgccaagatctggatc
tgccctttctgcttccagcgcaaccattttcctccacactattccatgatctcggagacc
aatctccctgctgagttgtacagccagtatacgacaatagagtatactattggtgacaag
aatcataatccagttggggaatttgatgttgagtcggcgtttgtgtttgttttggatact
tgtatgatcgaggaggagtttgagtatgtcaaatcggaggttaagagggcaattgggttg
ttgccggagaatgcaatggtgggttttgtgacttttgggacacaagtgcaagttcatgaa
ttggggtttagtgatatgtccaaagtatatgtttttagagggactaaagagattagtaaa
gatcagattatggagcagttaggtattggtggtgctggcaggaggaatgttcctggtggt
gctgttggtgttggtgggtatcagcagcagagggggatgccaatgcagaattcgggtgtg
agccggtttttgttgccagcttctgactgtgaatttacgctcaattcgctcttggatgag
ttgcaaacagatcagtggccggtggcaccaggaaatcggccttcaagatgtactggagta
gcattgagtgttgcagctggattgctgggagcttgtttgcctgggaccggagctagaatt
gtagctttagttggtggtccttgcaccgaagggccaggagcgattatatcaaaagatctg
tctgatcctgtacgttcccacaaggatcttgataaggatgcagcaccatatttcaagaaa
gcagtcaaattttatgatagtcttgcaaagcagcttgtcagccagggtcatgttttggac
ctttttgcctctgctctagatcaggttggggttgcagaaatgaaagttgcagtagaaaga
actggtggtcttgttgttctctcagaaagtttcggacattctgtatttaaggactccttt
aagcgtgtatttgattcaggagaaaagtctcttggcctctgtttcaatggaacactcgag
attaactgttcaaaggacatcaaaattcaggggattattggaccttgcacctctttggag
aagaaaggacctagtgttgctgatacagtcattggtgaggggaatacaacagcttggaag
atgtgtggccttgacaagagtagttgttttactgtcttctttgatatttcatcaagtgaa
aaatcaaatgctcctggaagtgcaaatccacagctatacttacagtttcttacaagttat
caaaatcctgagggtttgacattgcttcgggttacaactgtcactagaagatgggtagat
agtgctgttaactcagaggaattagtacaaggttttgaccaagagaccgcagctgtggta
atggcgagattcacatccctgaaaatggagtcagaggaaggatttgatgccactaggtgg
ctagaccgaaatctcatccgcttctgttccaaatttggtgaataccggaaggatgatccg
tcatcttttacattgaactcatttttctctttcttccctcagtttatgtttaatctgcga
agatcacaatttgtacaggttttcaataacagcccagatgagacagcttatttccgcatg
ttgttgaaccgtgaaaacattaccaatgctgctgtcatgattcaaccatcgctaatatca
tattcatttaactcactgcctcaacctgcattattggatgtcgcttctattggagctgat
cgtattctcttactggattcatactttagtgttgtcgtatttcatggaatgacaatagct
caatggcgtaacttgggttaccagaatcagccagagcaccaggtgtttgcacagctattg
caagcacccaaagacgatgcccaagcgatcattcatgaacgttttcccgttcctagattg
gtcgtgtgtgatcagcatggatcccaggcaaggttcttattggcaaagttgaacccatca
gctacatacaataatgccaatgagatggctgctgggtcagatataatattcacggatgat
gtgagccttcaagttttcttcgagcatcttcagaggttagctgtgcagtcttga
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