Populus trichocarpa (black cottonwood): 18108097
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Entry
18108097 CDS
T01077
Name
(RefSeq) RING-H2 finger protein ATL78
KO
K19040
E3 ubiquitin-protein ligase ATL10/75/76/77/78 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18108097
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18108097
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
18108097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-ANAPC11
zf-RING_UBOX
zf-RING_16
FANCL_C
Prok-RING_1
Zn_ribbon_IFT122_C
Motif
Other DBs
NCBI-GeneID:
18108097
NCBI-ProteinID:
XP_006371010
LinkDB
All DBs
Position
19:complement(1507486..1508763)
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AA seq
213 aa
AA seq
DB search
MSSTFSTPPLPFQHFHGVFHLRKLLLHNPLSPLPSSNAHHPLNPNATGDKSFNINVVVVF
IVLMCALFSSLGLNSFVRCALWCSNVNGNSSNRGIKKKALKTFPVVNYSAKDSKLPGLDT
ECVICISEFVFGDRVRILPKCSHVFHVRCIDMWLSSHSSCPTCRHCLKETCHKIAGVSQA
SSSEQPPPPIQERVVNIAPLEREGLVSNYRGVS
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctactttttccacaccccctctacctttccaacattttcatggtgtttttcac
ctaagaaaattgctactacacaaccctctttctcctttaccttctagtaacgcccatcat
ccattgaatcctaacgccacaggggataagagcttcaatataaatgttgttgttgtcttt
atagtcctaatgtgtgcactctttagttcacttgggctaaattctttcgtaaggtgtgca
ttatggtgttcaaacgtaaatggaaattcttccaatagagggatcaagaaaaaagccttg
aaaactttccctgtagtgaattactcagcaaaggatagtaaattgcctgggttggacaca
gaatgtgtcatatgcatatcagagtttgtatttggtgatcgtgttcgaattttgccaaag
tgtagccatgtatttcatgtgaggtgcattgatatgtggctcagctcacactcatcttgc
ccgacatgcaggcactgccttaaggagacatgccacaagattgctggtgttagtcaggct
agctcatcagaacaaccacctcctcccatccaagaaagagttgtgaacattgcacccctc
gagcgtgaaggtttggtcagcaattacaggggagtcagctaa
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