Populus trichocarpa (black cottonwood): 18108218
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Entry
18108218 CDS
T01077
Name
(RefSeq) U-box domain-containing protein 9
KO
K27971
U-box domain-containing protein 9 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18108218
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18108218
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
U-box type E3
18108218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
U-box
Arm
ARM_ARMC5
UTP20
ARMC9_ARM
RTTN_N
zf-Nse
IcmW
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
18108218
NCBI-ProteinID:
XP_006371139
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All DBs
Position
19:4164312..4167211
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AA seq
450 aa
AA seq
DB search
MAKSGVLETIPCTVTKATELKKELEKLVKAILDEEDYRVEVTDEAMRVLSVLKELKFKKS
LKIVDDTVLPEEFKCPISREIMGDPVVLATGQTYDLPFIQRWLNEGHRTCPQTQQVLSHT
ILTPNHLVREMISQWCKERGIELPRPVKDVDEVRTDADRGHLKSLLEKMSSSLSDQKEAA
KELRLLTKRMPSFRALFSDSTDAIPKLLNPLSPGRANTHPDLQEDLITTVLNLSIHDNNK
RLAAENPLVIPLLVESVKSGTIETRSNAAAAIFSLSALDSNKLIIGKSGALKPLIDLLEE
GHPLAMKDAASAIFNLCLVLENKGRAVREGAVRVILKKIMDCIFVDELLAILAMLASHQK
AVEEMGELGAVHCLLGIIRESSSERNKENCVAILHTICLNDYSKWRDIREEENANGTLSR
LAESGTSRAKRKANSILERLNRAASLTHTA
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaagtggagttcttgagaccataccatgtacagtgacaaaggcaacagagtta
aagaaagaattggagaagctagtaaaggcaattcttgatgaggaggattatagagtggag
gtcactgatgaagccatgagggttttgagtgtcttgaaagaattgaaattcaagaaatct
ttgaagattgtggatgatacagttctccctgaagaatttaaatgtcccatttcaagggag
ataatgggtgaccctgttgtcttggctactggacagacttatgatctaccattcatccaa
agatggctaaatgaagggcaccgaacgtgtccccagacccagcaagtcctttctcatact
atcctgacccctaatcatttggtgcgagaaatgatttcacagtggtgcaaggagcgtgga
attgagctaccaaggcccgtgaaggatgttgatgaggtgcgtactgatgcggacagaggc
catttgaagtcactgcttgaaaagatgtcctcttccctttcagatcaaaaggaagctgca
aaagagcttcggctgcttactaaaaggatgccatcattccgggcccttttcagtgactca
actgatgccattccaaaattgctcaatccactatcaccaggcagagctaacactcaccct
gatctgcaagaagatttgatcacaacagttttgaacctctccattcatgacaataataaa
cggctagctgcagaaaatccacttgtcatccccctgcttgttgaatctgtaaaatctgga
actattgaaacaagaagcaatgctgccgccgccatcttctccttgtcagccctagattcg
aacaagctcattattggaaaatcaggtgctctcaaacctctaattgaccttttagaagaa
gggcatccactggcaatgaaggatgctgcatcggcaatattcaacctatgtcttgtcctt
gagaataaaggtagggctgtccgagaaggggcagtcagggtaatccttaaaaaaatcatg
gattgcatctttgttgatgagttgttggctattcttgcaatgcttgctagccatcagaaa
gctgttgaggaaatgggggagcttggtgcggttcattgtttgcttggcattataagggag
agcagttctgagcgcaacaaagagaattgtgttgcaattttacacacaatctgtctaaac
gactactctaaatggagggacattagggaagaggaaaatgccaacggtacgctttcgaga
ctcgcagagagtgggacttcaagagccaagaggaaagctaatagcatcctcgagagactg
aatagagctgcttcactcacacatactgcatga
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