Populus trichocarpa (black cottonwood): 18108304
Help
Entry
18108304 CDS
T01077
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18108304
04120 Ubiquitin mediated proteolysis
18108304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18108304
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18108304
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
18108304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
FlxA
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
FHA_2
zf-RING_5
zf-HC5HC2H
Integrase_2
Motif
Other DBs
NCBI-GeneID:
18108304
NCBI-ProteinID:
XP_006371259
UniProt:
U5FGQ5
LinkDB
All DBs
Position
19:8560014..8567045
Genome browser
AA seq
563 aa
AA seq
DB search
MMRLRTYASLSLVGALAVTYHAFNSRGQFYPAMVYLSTSKITLVLLLNMGLVIMCILWQF
IKRLFLGSLREAEVERLNEQSWRELMEILFAITIFRQDFSVTFLAMVTTLLLIKSLHWLA
QKRVEYIETTPSVNWLSHVRIVSFLGFLFLLDSMFLYSSVKYLLETRQASVSLFFSFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWEKKPIYTFYLEFVRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETLRNFKIRVADYIRYRKITSNMNDRFPDATAEEIDASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRALVVPPENSVSASGAQHGAQPDTHQQETGT
ATSATRISAGGVADDSLSRNQVRLQAAAAAASVYEKSFTYPSANTIMWSPGYALLPQVQR
PLADSTNMEPSGDQGVVGQPRLQFSIQGGPPNLTLPQLPHCVFVPIQAPGACVYQGERAC
STPNSELEAQKNFLQHQIEVLQSQLQLLQKPETEESMLLAPTTSSDNKGKTVASSPSVSE
SGYHAEIGQTDDADTANNVDLKL
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgatgcggctgcgcacatacgcgagcctcagtttggtgggtgctctagctgtaacttat
catgcattcaacagtagaggccagttttaccctgctatggtttatttatccacctctaag
atcactttagtccttcttctcaacatgggtttagtcattatgtgcattttatggcaattc
attaagcggctattccttggttccctccgtgaagctgaagttgagaggttgaatgagcag
tcgtggagagagctcatggaaattctctttgccattactatttttaggcaggacttctcc
gtaacctttcttgccatggtcaccaccttgttattaatcaagtctctgcattggttggct
caaaagagggttgaatacattgagacaacaccatctgttaactggttatctcatgttcgg
attgtttcttttctgggtttcctttttctcctagacagcatgtttttgtacagttctgta
aagtatttgcttgaaacaaggcaggcttcagtgtctctcttcttctcgtttgagtacatg
atactggcgacaacaactgtgtcaacatttgtaaaatatgttttctatgtgagtgacatg
cttatggaaggacaatgggaaaaaaagcctatttacaccttttatttggaatttgttcgg
gacttgcttcacttgtctatgtatctgtgcttcttccttgtcattttcatgaactatggt
gtgcctttgcacttaatacgggagctttatgagacactcaggaatttcaaaattcgtgtt
gctgattacattcgttataggaagatcacttccaatatgaatgatcggtttccagatgca
acagctgaagagattgatgcaagtgatgcaacctgtattatttgtcgtgaagagatgacc
acagccaagaagttattatgtggacatctttttcatgttcattgtctgcgttcatggttg
gagcgacaacatacttgccctacatgcagagccctagttgtaccacctgaaaatagtgtc
agtgcatctggagcacaacatggagcacaaccagatactcaccaacaggaaactggcact
gcaacatctgcaactcggatttcagctggtggagtggctgatgatagtttgagcaggaat
caggtcagactccaagctgctgccgctgccgcttctgtatatgagaagtcattcacatat
ccttcagcaaacactataatgtggtcacctggatatgccttactccctcaggttcagagg
cctttggctgactccaccaatatggagccaagtggagatcaaggtgtcgttggacaacca
cggctgcaattttctatccaaggtggacccccaaacttgaccttgcctcaacttccccac
tgtgtctttgtccccattcaggcacctggtgcttgtgtgtatcagggagagagagcgtgc
agtacaccaaactctgagttggaagctcagaaaaattttcttcaacatcagattgaggtc
ctgcaaagtcagctccaactactacagaagccggagactgaggaaagtatgcttttggct
cccacaacatcatcagataataaaggcaagactgttgcatcatcaccctctgtatcagaa
tctggttatcacgcagagattggccagactgatgatgctgacacagcgaataacgtagat
ctcaagctttaa
DBGET
integrated database retrieval system
