Populus trichocarpa (black cottonwood): 18108389
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Entry
18108389 CDS
T01077
Name
(RefSeq) vacuolar protein sorting-associated protein 9A
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18108389
Membrane trafficking [BR:
pop04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
18108389
Protein recycling
Other Rab GTPase associated proteins
18108389
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
Motif
Other DBs
NCBI-GeneID:
18108389
NCBI-ProteinID:
XP_006371359
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All DBs
Position
19:10586486..10594742
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AA seq
389 aa
AA seq
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MDTAASQSSSSSSSSSSSIMFYDFLDKMRNPASLNLVKSIKSFIVSFQFSSANPENDSKR
VQEFFSTMEAAIMEHPLWAGATDDEFDCSMEGLEKYIMTKLFSRTFAISPEDVKIDQEIS
EKIHLLQSFLRPEHLDIPPFLQNEASWLLAEKELQKINAFRAPREKLHCIMSCCRIINNL
LLNASMSENHVPGGADDFLPVLIYVTIKANPPQLHSNLKYIQLYRRQETMVSEPAYYFTN
LVSAKSFIGQLDAKSLSMDEIEFEESMQAAKLDSKVSQVEASQAQTDPIFSTRMHGMKTN
IDGRSNYPYMEAEPGELTVEDVERLLSLYKDVVTKYSSLCRAVRHRSATRTEPSLPVPKG
RDDILLQLEGQAQMIREEKAEVSDTTKGC
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggacactgcagcgagtcaatcatcgtcatcgtcatcgtcatcgtcatcgtcaattatg
ttttatgattttcttgataaaatgcgaaatcctgcttctctcaatctagtcaaatccatt
aaaagcttcattgtatcattccaattttcgtctgcgaaccctgaaaatgatagcaaaagg
gtacaagagtttttctcaacaatggaagcagctatcatggaacatccattatgggctggt
gccactgatgatgaatttgattgctcaatggagggactggagaaatacatcatgacgaaa
ttgttctcccgaacatttgctatttctcccgaggatgtgaagattgaccaagagatctct
gagaagatacacttgttgcaatcctttttacggcctgagcatttggatattcctccattt
cttcagaatgaagcttcatggctgcttgcagaaaaggaattgcagaagatcaatgctttc
agagctcctcgtgagaagcttcactgtattatgagctgctgcaggatcatcaacaatttg
ctgctcaatgcatcaatgtcagaaaatcatgtaccgggaggggccgatgactttcttcct
gttcttatatatgtcacaatcaaggccaatcctcctcagttgcattcaaacctcaaatac
atccaattgtacaggaggcaagaaacaatggtatctgaaccagcttattatttcacgaat
cttgtctcagccaagtcctttattggccagttagatgccaaatctctttctatggatgaa
attgaatttgaagagagcatgcaagcagctaagttggacagcaaggtatcacaagtagaa
gcttcacaggcacagacagatcctattttttctacaagaatgcatggcatgaaaacaaat
atagatggcagatcaaattatccatatatggaagctgagcctggtgaactgactgttgaa
gacgtggaaagattgctgagtctgtacaaagatgtggttacaaagtactctagcctctgc
agggctgttaggcatcgctctgcaaccagaacagaaccatcccttcctgttcctaaaggg
agagatgacattttattgcaacttgagggacaagcacaaatgatccgagaggagaaggca
gaggtcagtgatacaacgaaaggatgctga
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