KEGG   Populus trichocarpa (black cottonwood): 18108997
Entry
18108997          CDS       T01077                                 
Name
(RefSeq) protein RDM16 isoform X1
  KO
K12843  U4/U6 small nuclear ribonucleoprotein PRP3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18108997
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    18108997
Spliceosome [BR:pop03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    18108997
SSDB
Motif
Pfam: PRP3 Prp3_C
Other DBs
NCBI-GeneID: 18108997
NCBI-ProteinID: XP_024462963
LinkDB
Position
8:complement(2803793..2810845)
AA seq 848 aa
MDRSFKHTRDDRDRDHHKHRSRDDKHRDSSDSHHHRSERESHQREHHKSSRRDDTKRERS
HEREESVDRRERSHDHKSSSSSRREERERSYDAREEREGSRERKREKRERETVDEDYLER
KKRKEGGGSEDRAVVEKEKRSRRRFGEKVKEEDNRTDNNDNGNSFENVKRVDSSEAGLKE
EVNDEPIGGGRGSTTENGGVSTTNGASLESFTKTPSNQPETSVAPVHPLPTKVSSISNTN
ENKGVSIARSHAVPGKSSTDGTSSAAGKSGNLSLDALAKAKKALQMQKELSEKLKKLPLS
SKGNNTSSGGSSQRVLPSATTTTAVSTGAVSSSSSLSTSTMVSIKTPSTGVAPLPDITSI
PNYEAVKRAQELAAKMGFRQDPEFAPLINLFPGQLPAEVSVPQKPTKTPVLRVDALGREI
DERGNVVNVTKPSNLSTLKVNINKQKKEAFQILKPELDVDPESNPYYDVKMGINKNKFLR
PKRMTFQFVEEGKWLKEAEIMKLRNQFGEEREKDMKARQALHAKAKAAPDINPNLIEVSE
RVITKAKPKDPIPDVEWWDAPLLTGGTYGENDDVLITEHRLKRDKITIYVQHPRPIEPPA
EPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSE
ATQDPTRLEKQIRTAAAEREQAHIDRNTARKLTPAERREKKERKLFDDPNTMETIVSIYR
INNLSDKKTRFKVDVNAHENRLTGCTVITEGICVLVVEGGSKSIKRYGKLMLRRINWAEA
VNEDEGDDNEEKPVNKCMLVWQGSVAKPSFHRFSLHDCVTEAAARKYFADAGVAHYWDLA
VNFSDDQM
NT seq 2547 nt   +upstreamnt  +downstreamnt
atggaccgctccttcaaacacacccgtgacgaccgtgatcgtgaccaccacaaacaccga
tcaagagacgataagcatcgagactcctccgattctcaccaccaccgatcagagagagaa
tctcaccaacgcgagcatcacaaatcatccaggcgcgatgatacaaagcgcgaaagatct
cacgaacgagaagagagtgtggataggcgagagagatctcacgatcacaaatcgtcttcc
tcatcgaggcgtgaggagagagagaggtcgtatgatgcgagagaggagagagaagggagt
agagagagaaaacgcgagaagagagaaagagaaactgtagatgaagattatttggagaga
aagaaaagaaaggagggaggaggtagtgaggatagagctgttgttgagaaggagaagagg
agtagaagaagatttggtgaaaaagtgaaagaagaggataataggactgacaacaatgat
aatggtaatagttttgagaatgtgaagagagtggattcgagtgaggctggactgaaggag
gaagtcaatgatgagccaattggtggcggcaggggcagcaccacagaaaacggtggtgtt
tcgactacaaatggtgcttctctggaatcattcactaagactccaagcaatcagcctgag
acctctgtggcacctgttcacccccttcctaccaaggtatcttcaatttcaaacacaaat
gaaaataagggagttagtattgccagatctcatgcggttcctggaaaatctagtacagat
gggacatcttcagctgctgggaaaagtggaaatctatcacttgatgcattagcaaaagct
aagaaagccttgcaaatgcagaaggaactgtcagagaagctgaagaagctacccctgtca
agcaagggtaataacacaagttcaggtggtagctcacaaagggtattgccatcagcaacc
actactactgctgtttcgactggggcagtttctagttcatcctccttatctacaagcact
atggtgtctataaagacaccttcaactggtgtggcacctctgcccgatattactagcata
cccaattatgaagctgttaagcgtgcccaggaacttgctgctaaaatgggatttcgccag
gaccctgagtttgctcctcttataaacttgttccctggccagttgccagcagaagtctct
gtgccacagaagcctactaagacccctgttcttcgtgtggatgcacttggtagggaaata
gatgaacgtggaaatgtggtgaatgtgactaaaccaagcaaccttagcaccttaaaggtc
aacatcaacaagcagaaaaaggaagcattccagattcttaaacctgaattagatgtggat
cctgaatcgaacccttattatgatgtgaaaatgggaattaataagaataagttcttgaga
cccaaacgaatgaccttccagtttgtagaggaaggcaagtggttaaaagaagctgaaata
atgaaactgaggaatcaatttggagaagaaagagagaaggatatgaaggcaaggcaagca
ttacatgcaaaggcgaaggcagctccggatataaatcctaatttgatagaggtatcagag
cgagttataaccaaagcgaagcctaaggatccgattcctgatgtagagtggtgggatgca
cctttactgactggtgggacttatggtgaaaatgatgatgttcttatcactgagcataga
ttgaaaagggataaaattactatctatgtgcaacacccacgtcctattgagcccccggct
gagccagctcctccaccacctcaacctttgaaactaactaagaaggagcagaagaagctc
agaacacagcgtcgacttgctcgggaaaaggatagacaggaaatgattagacaaggcttg
attgaacctccaaaaccaaaggttaagatgagcaatttaatgaaagttcttggctcagaa
gcaacacaagaccccactagacttgaaaagcaaattcgtactgcagctgctgaacgtgaa
caagctcacattgatcgaaatactgcacgtaagctcactcctgctgagcgccgtgaaaag
aaggagagaaagctctttgatgacccgaacaccatggaaactattgtttctatttacaga
atcaacaacctctcagacaagaaaactcgcttcaaagttgatgtcaatgctcacgagaac
cgcttgactggatgcacggtgattacagagggaatttgtgtgttggtggttgaaggggga
agcaaatccatcaaaaggtatgggaagctaatgcttaggcgtataaactgggctgaagct
gttaatgaggatgaaggagatgacaatgaggagaaacctgtgaacaaatgtatgctggtg
tggcaaggtagtgttgccaaacctagcttccacaggttttctttacatgactgtgtgact
gaagctgcagcccgaaaatattttgctgatgctggtgttgcccactattgggatcttgct
gtcaatttctctgatgatcaaatgtga

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