Populus trichocarpa (black cottonwood): 18108997
Help
Entry
18108997 CDS
T01077
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18108997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
18108997
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
18108997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
18108997
NCBI-ProteinID:
XP_024462963
LinkDB
All DBs
Position
8:complement(2803793..2810845)
Genome browser
AA seq
848 aa
AA seq
DB search
MDRSFKHTRDDRDRDHHKHRSRDDKHRDSSDSHHHRSERESHQREHHKSSRRDDTKRERS
HEREESVDRRERSHDHKSSSSSRREERERSYDAREEREGSRERKREKRERETVDEDYLER
KKRKEGGGSEDRAVVEKEKRSRRRFGEKVKEEDNRTDNNDNGNSFENVKRVDSSEAGLKE
EVNDEPIGGGRGSTTENGGVSTTNGASLESFTKTPSNQPETSVAPVHPLPTKVSSISNTN
ENKGVSIARSHAVPGKSSTDGTSSAAGKSGNLSLDALAKAKKALQMQKELSEKLKKLPLS
SKGNNTSSGGSSQRVLPSATTTTAVSTGAVSSSSSLSTSTMVSIKTPSTGVAPLPDITSI
PNYEAVKRAQELAAKMGFRQDPEFAPLINLFPGQLPAEVSVPQKPTKTPVLRVDALGREI
DERGNVVNVTKPSNLSTLKVNINKQKKEAFQILKPELDVDPESNPYYDVKMGINKNKFLR
PKRMTFQFVEEGKWLKEAEIMKLRNQFGEEREKDMKARQALHAKAKAAPDINPNLIEVSE
RVITKAKPKDPIPDVEWWDAPLLTGGTYGENDDVLITEHRLKRDKITIYVQHPRPIEPPA
EPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSE
ATQDPTRLEKQIRTAAAEREQAHIDRNTARKLTPAERREKKERKLFDDPNTMETIVSIYR
INNLSDKKTRFKVDVNAHENRLTGCTVITEGICVLVVEGGSKSIKRYGKLMLRRINWAEA
VNEDEGDDNEEKPVNKCMLVWQGSVAKPSFHRFSLHDCVTEAAARKYFADAGVAHYWDLA
VNFSDDQM
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggaccgctccttcaaacacacccgtgacgaccgtgatcgtgaccaccacaaacaccga
tcaagagacgataagcatcgagactcctccgattctcaccaccaccgatcagagagagaa
tctcaccaacgcgagcatcacaaatcatccaggcgcgatgatacaaagcgcgaaagatct
cacgaacgagaagagagtgtggataggcgagagagatctcacgatcacaaatcgtcttcc
tcatcgaggcgtgaggagagagagaggtcgtatgatgcgagagaggagagagaagggagt
agagagagaaaacgcgagaagagagaaagagaaactgtagatgaagattatttggagaga
aagaaaagaaaggagggaggaggtagtgaggatagagctgttgttgagaaggagaagagg
agtagaagaagatttggtgaaaaagtgaaagaagaggataataggactgacaacaatgat
aatggtaatagttttgagaatgtgaagagagtggattcgagtgaggctggactgaaggag
gaagtcaatgatgagccaattggtggcggcaggggcagcaccacagaaaacggtggtgtt
tcgactacaaatggtgcttctctggaatcattcactaagactccaagcaatcagcctgag
acctctgtggcacctgttcacccccttcctaccaaggtatcttcaatttcaaacacaaat
gaaaataagggagttagtattgccagatctcatgcggttcctggaaaatctagtacagat
gggacatcttcagctgctgggaaaagtggaaatctatcacttgatgcattagcaaaagct
aagaaagccttgcaaatgcagaaggaactgtcagagaagctgaagaagctacccctgtca
agcaagggtaataacacaagttcaggtggtagctcacaaagggtattgccatcagcaacc
actactactgctgtttcgactggggcagtttctagttcatcctccttatctacaagcact
atggtgtctataaagacaccttcaactggtgtggcacctctgcccgatattactagcata
cccaattatgaagctgttaagcgtgcccaggaacttgctgctaaaatgggatttcgccag
gaccctgagtttgctcctcttataaacttgttccctggccagttgccagcagaagtctct
gtgccacagaagcctactaagacccctgttcttcgtgtggatgcacttggtagggaaata
gatgaacgtggaaatgtggtgaatgtgactaaaccaagcaaccttagcaccttaaaggtc
aacatcaacaagcagaaaaaggaagcattccagattcttaaacctgaattagatgtggat
cctgaatcgaacccttattatgatgtgaaaatgggaattaataagaataagttcttgaga
cccaaacgaatgaccttccagtttgtagaggaaggcaagtggttaaaagaagctgaaata
atgaaactgaggaatcaatttggagaagaaagagagaaggatatgaaggcaaggcaagca
ttacatgcaaaggcgaaggcagctccggatataaatcctaatttgatagaggtatcagag
cgagttataaccaaagcgaagcctaaggatccgattcctgatgtagagtggtgggatgca
cctttactgactggtgggacttatggtgaaaatgatgatgttcttatcactgagcataga
ttgaaaagggataaaattactatctatgtgcaacacccacgtcctattgagcccccggct
gagccagctcctccaccacctcaacctttgaaactaactaagaaggagcagaagaagctc
agaacacagcgtcgacttgctcgggaaaaggatagacaggaaatgattagacaaggcttg
attgaacctccaaaaccaaaggttaagatgagcaatttaatgaaagttcttggctcagaa
gcaacacaagaccccactagacttgaaaagcaaattcgtactgcagctgctgaacgtgaa
caagctcacattgatcgaaatactgcacgtaagctcactcctgctgagcgccgtgaaaag
aaggagagaaagctctttgatgacccgaacaccatggaaactattgtttctatttacaga
atcaacaacctctcagacaagaaaactcgcttcaaagttgatgtcaatgctcacgagaac
cgcttgactggatgcacggtgattacagagggaatttgtgtgttggtggttgaaggggga
agcaaatccatcaaaaggtatgggaagctaatgcttaggcgtataaactgggctgaagct
gttaatgaggatgaaggagatgacaatgaggagaaacctgtgaacaaatgtatgctggtg
tggcaaggtagtgttgccaaacctagcttccacaggttttctttacatgactgtgtgact
gaagctgcagcccgaaaatattttgctgatgctggtgttgcccactattgggatcttgct
gtcaatttctctgatgatcaaatgtga
DBGET
integrated database retrieval system