Populus trichocarpa (black cottonwood): 18109220
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Entry
18109220 CDS
T01077
Name
(RefSeq) elongation factor 1-alpha isoform X13
KO
K03231
elongation factor 1-alpha
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18109220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18109220
03016 Transfer RNA biogenesis [BR:
pop03016
]
18109220
03012 Translation factors [BR:
pop03012
]
18109220
04131 Membrane trafficking [BR:
pop04131
]
18109220
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
18109220
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
18109220
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
18109220
Translation factors [BR:
pop03012
]
Eukaryotic type
Elongation factors
18109220
Membrane trafficking [BR:
pop04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
18109220
Exosome [BR:
pop04147
]
Exosomal proteins
Proteins found in most exosomes
18109220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
AAA_22
FlpD
Motif
Other DBs
NCBI-GeneID:
18109220
NCBI-ProteinID:
XP_006387491
UniProt:
A9PDD3
LinkDB
All DBs
Position
10:20483359..20498232
Genome browser
AA seq
449 aa
AA seq
DB search
MGKEKSHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
GGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK
VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQIQEPKRPSDKPLRLPLQD
VYKIGGIGTVPVGRVETGIIKPGMVVTFGPTGLSTEVKSVEMHHEALLEALPGDNVGFNV
KNVAVKDLKRGFVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKF
AEILTKIDRRSGKELEKEPKFLKNGDAGMIKMIPTKPMVVETFSAYPPLGRFAVRDMRQT
VAVGVIKSVEKKDPSGAKVTKSAAKKGAK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaggaaaagagtcacatcaacattgtggtcattggccatgtcgactctggaaaa
tcaaccaccactggccacttgatctacaagcttggaggtattgacaagcgtgtcatcgag
aggttcgagaaggaagctgctgagatgaacaagaggtcattcaagtatgcctgggtgctc
gacaagctcaaggctgagcgcgagcgtggtatcaccattgacattgccttgtggaagttc
gagaccaccaagtactactgcactgtcattgatgcccctggacatcgtgactttatcaag
aacatgattactgggacttcccaggctgactgtgccgtgcttatcattgattccaccact
ggtggttttgaagctggtatctccaaggatggccagactcgtgagcacgcactccttgcc
ttcacccttggtgtgaggcaaatgatctgctgctgtaacaagatggatgccacaactcca
aagtactccaaggcaaggtatgatgaaattgtcaaggaggtgtcatcctacttgaagaag
gttggttacaaccctgacaagattccctttgtccccatctctggatttgagggtgacaac
atgattgagagatctaccaaccttgactggtacaagggcccaactctcctggatgccctc
gaccagatccaggagcccaagaggccctcagacaagcccctccgtctcccgcttcaggac
gtgtacaagattggtggtatcggaactgtcccagtgggtcgtgttgaaactggtatcatc
aagcccggcatggttgtcacattcggtccaactggactgagtactgaagtcaagtctgtt
gagatgcaccacgaggctctcctagaggcacttcccggtgacaatgtcgggttcaatgtt
aagaatgtagctgttaaggatctgaagcgtggttttgttgcctcgaactccaaggacgat
cctgccaaggaggctgccaacttcaccgcccaagttatcatcatgaaccatcctggacag
atcggaaacggttacgctccagtccttgactgccacacctgtcacattgctgtgaagttt
gctgagatcctcaccaagattgacaggcggtctggtaaggaactggagaaggagcccaag
ttcctgaagaacggtgatgctggtatgatcaagatgattcccaccaagcccatggtggtg
gagactttctcagcgtatcctccacttggtcgttttgctgtgagggacatgcgccagacc
gttgctgtgggagttatcaagagcgtggagaagaaggatccctctggtgctaaggtgacc
aaatctgctgccaagaagggtgccaagtga
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