Populus trichocarpa (black cottonwood): 18109585
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Entry
18109585 CDS
T01077
Name
(RefSeq) alpha-amylase
KO
K01176
alpha-amylase [EC:
3.2.1.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00500
Starch and sucrose metabolism
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
18109585
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.1 alpha-amylase
18109585
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Gene cluster
GFIT
Motif
Pfam:
Alpha-amyl_C2
Alpha-amylase
Glyco_hydro_70
AMT4_dom_C
Motif
Other DBs
NCBI-GeneID:
18109585
NCBI-ProteinID:
XP_006387871
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Position
2:9602065..9604089
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AA seq
423 aa
AA seq
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MRFLTFCFFSLFLSVFPLFTSSALLFQGFNWESCNQAGGWYNSLKNLVPDLANAGITHVW
LPPASQSVAPQGYMPGRLYDLSASKYGSQGELKSLIGAFHQKGIKCLADIVINHRTAEKQ
DGRGIWCIFEGGTSDDRLDWGPSLICSDDTAYSDGKGNPDTGGDFGGAPDIDHLNPRVQK
ELSDWMNWLKSEIGFDGWRFDFVKGYAPSITKIYMENTSPDFAVGEKWDSLAYGQDGKPD
YNQDAHRGGLKDWIQAAGGAVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGLIGLLPQN
AVTFIDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEEIGKLATI
RKTSGIGSASTVNILASDADLYVAAIDGNMIMKIGPKMDLGNLIPSNFQVAASGTDYCVW
VKK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagatttctcactttctgcttcttctctctcttcctctcagttttccctttgttcact
tcttctgctttgttatttcaggggttcaactgggagtcatgtaatcaggcaggaggatgg
tacaactcactaaagaacttggttcctgatttggctaatgctggaattactcatgtctgg
cttcctccagcctctcagtcagttgcaccgcaaggatatatgccaggcaggctgtatgat
ctgagtgcatcaaaatatggatctcagggtgaattgaaatcactaatcggggctttccat
cagaagggaattaaatgcctggcagacattgtcataaaccatagaactgctgagaagcaa
gatgggagaggaatatggtgcatttttgaaggtggaacttctgatgatcgccttgactgg
gggccgtccctcatttgcagtgatgacactgcctattctgatggcaaaggaaatcctgat
acaggaggtgacttcggaggtgcccctgatattgaccacctcaatcctagagttcagaag
gagttatcagattggatgaactggttaaagtctgaaataggatttgatggatggcgattc
gactttgttaagggctatgctcctagtattaccaaaatttatatggaaaatacttcacca
gattttgcagttggtgaaaaatgggactctcttgcttatggccaggatggaaagcctgac
tataaccaggatgcgcaccgtggtggactaaaagattggattcaagcagctggtggtgct
gtcacagcatttgattttacaacaaaagggatacttcaagctgctgtgcaaggagagtta
tggaggttgaaggactcaaatggaaagccaccaggattgattggcctgttgccacaaaat
gctgtgactttcattgacaatcatgacaccgggtctactcaaaagctttggccatttcca
tcagataaagtcatgcagggatatgcctacattctcactcatcctgggaccccatccatt
ttttatgatcacttttttgactggggcctaaaggaagaaattggcaaattggcaacaatt
aggaaaacttctgggattggttctgcaagcactgtgaatattttagcctctgatgctgat
ctttatgtggcagcaatcgatggtaacatgatcatgaagattggacctaagatggatctt
ggaaaccttattccctcaaacttccaggttgctgcatctggaacagattattgtgtgtgg
gtaaaaaagtaa
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