Populus trichocarpa (black cottonwood): 18109816
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Entry
18109816 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18109816
KO
K14791
periodic tryptophan protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
18109816
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Other 90S particles
18109816
Pre-60S particles
Other pre-60S particles
18109816
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_WDHD1_1st
WD40_RFWD3
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_NUP159_NUP214
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_2nd
WDR54
Motif
Other DBs
NCBI-GeneID:
18109816
NCBI-ProteinID:
XP_052310438
LinkDB
All DBs
Position
7:1481660..1504078
Genome browser
AA seq
488 aa
AA seq
DB search
MIAAVSWVPKGVAKSVPSVADPPSKEEIEELIKASDLERSGEDSGSEEDDQEMDVDAAKQ
TGEVSQALAVANALGRSSKVNKSETKFDDIADGLQELDMDKYDDEEDGIELFSTGLGDLY
YPSNSMDPYIKDGDDDDSEDLEDMAIKPKDAVIVCACNKDEFSNLEVWILDETSDGDSNI
YVHHEVPLSAFPLCTAWLDCPLKGGEKGNFIAVGSMEPAIEIWDLDIIDEVQPAVVLGGI
EEKKKKKGKKVSIKYKEGSHTDSVLGLAWNKHFRNILASASADKQVKIWDVDAGKCDITM
EHHTDKVQAVAWNHHEPQVLLSGSFDRSVVMKDGRLPSDPGFKWSVTADVESLAWDPHDK
HLFVVSLEDGTVQGFDIRAAKSGSSSDLKPSFTLHAHDKAVCTISYNPLAPNLLATGSTD
KMVKLWDLSNNQPSCLVSKNPKAGAIFSVSFSEDNPFLLAIGGSKGTLELWDTLSEAEVA
RRFGTTAS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgatagcagcagtttcgtgggtacccaaaggggttgcaaagtctgtaccaagtgtagca
gacccaccttcaaaagaggaaattgaagagctgatcaaagctagtgatttagagagaagt
ggagaagatagtggcagcgaggaagatgaccaggaaatggatgttgatgctgccaagcag
accggtgaagtaagccaagcattagctgtagcaaatgcacttggcagaagttccaaagtt
aacaagtcagagaccaaatttgatgacatagcagatggtctgcaggaacttgatatggac
aaatatgatgatgaggaggatggtattgagctgttcagcacaggactcggggacctttac
tacccaagtaatagcatggacccgtacatcaaggatggagatgatgatgattctgaagat
cttgaagacatggctatcaaaccaaaggatgcagtcattgtttgtgcatgcaacaaggat
gaatttagtaacctcgaggtttggatattggatgaaacaagtgatggtgattcaaacata
tacgttcaccatgaggttcccctttcagcatttcccctttgcacagcatggcttgattgt
ccacttaaagggggagaaaaagggaattttatagctgttgggtcaatggaacctgccatt
gaaatatgggaccttgacattattgatgaagtgcaaccagctgtggtattaggtggcatt
gaagagaaaaagaagaaaaaagggaaaaaggtgtcaattaaatacaaagaaggcagtcac
actgattctgtccttggtcttgcttggaacaagcatttcaggaacatccttgccagtgct
agtgccgacaaacaagtcaaaatttgggatgtggatgctggaaaatgtgacattaccatg
gagcatcatacagacaaggttcaagcagttgcatggaatcatcatgagccacaagttctt
ctcagtggatcctttgatcgttcagtagtcatgaaggatggaaggttgccttcagatcct
ggtttcaagtggtcggtcacagctgacgttgaaagcttggcctgggatccgcatgataag
catttatttgtggtgagtcttgaagatggtacagttcaaggttttgacatccgtgctgcc
aagtctggatcatcttctgaccttaagccaagttttaccctccatgcacatgacaaagct
gtttgcacaatctcttataatcctttagcacctaatcttcttgctactggatcaacagat
aaaatggtaaaactctgggatctgtccaacaaccaaccctcatgtttagtatccaagaat
cctaaagcaggagctatcttttctgtttccttctcagaggacaacccttttctgctcgct
attggaggctccaaggggacattggaactatgggatacattgtctgaggccgaggttgct
agaagatttggaaccacagcaagctga
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integrated database retrieval system
