Populus trichocarpa (black cottonwood): 18110981
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Entry
18110981 CDS
T01077
Name
(RefSeq) protein transport protein Sec24-like At4g32640
KO
K14007
protein transport protein SEC24
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18110981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18110981
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
18110981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
V-ATPase_G_2
Motif
Other DBs
NCBI-GeneID:
18110981
NCBI-ProteinID:
XP_024439148
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All DBs
Position
13:2334660..2349557
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AA seq
1102 aa
AA seq
DB search
MASNVPPGAPRQPPPPSYNPNYQQNPNILSDNFQNLNLNRPSSMPNSAPRPSPFGQPPPF
PSSAPSPQFSRPGAPPPGVVPRPSVPPSGLPPSTFPPNVTPGRPTGPPFSQPQPFSQTQP
FSQPQPFSQPQPFSQTQPFGSRPPPGSFPSSASSGLAMGPVSGAPPQGSLVPPLGSRPSP
AAPSSSPLSMPPSSSFGGLMSNGPPAPAFQSAPRFPSPVSAPQQPPMGPPPTVGLARAPP
QSMRHLMGSSGISGQPVAPFSAPPQGTPFSAQHGMAPPPVGSPFAPQMQPQSVAQPPPIP
GSAQPPRMFGMPPPLPNQMTAISPVMGQTGSPLSGASKIDPNQIPRPIPGSSVILHDTRA
GNQANPPPPATSDYIVSDTGNCSPRYMRCTINQIPCTVDLLSTSGMPLALLVQPLALPHP
SEDPVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRQFICNLCGFTDETPRDYHCNLGPD
GRRRDADERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMHAIQTGATAAACSSINQ
VIADLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDIHDVYTPLQTDVIVPVSEC
RQHLELLLDSIPTMFQNSRIVESAFSAAIKAAFLAMKNTGGKLLVFQSVLPSVGIGALSA
REAEGRSNISAGEKEAHKLLQPADKTLKEMAIEFAEYQVCVDVFITTQTYVDIASISVIP
KTTGGQVYYYYPFSAVSDPAKLYNDLRWNVTRPQGFEAVMRVRCSQGIQVQEYHGNFCKR
IPTDIDLAAIDCDKTIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTNLSLPCTN
NLSNLFRLADLDSQFVCFLKQAASEIPSNPPLVIRDRVTNFCINILLSYRKFCATVSSSG
QLILPEALKLLPLYTLALIKSTGLKLDGRIDDRSFWINYVSSVSTPLAIPLVHPRMIAIH
DLDSQEAIGSLIPPALPLSSEYVNDNGVYLLENGQDVSIYIGNSVNPDILQKLFGISSVA
EIPTQYVLEQYDNSLSKKLNDVVNEIRRQRCSFLRLKLCKKGDPSGMTFFSYLVEDKVPA
GTLSYVEFLVQVHRQIQVKMSS
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggcatctaatgtgcctccaggggcacctagacaaccaccaccgcctagttataaccca
aattatcagcaaaacccgaatattttatccgataattttcagaatttgaatctcaatcgg
ccctcttccatgccgaattcagctcctaggccttcgccatttggccaaccaccgccattt
ccctcctcagctccttcaccacaattttcccggcctggtgcaccacctcctggtgttgtc
cctagaccttcagtgcctccctcgggattacctccatccactttccccccaaatgttacc
cctggtagacctactgggccgcctttcagtcagccgcagcctttcagtcagacgcagcct
ttcagtcagccgcagcctttcagtcagccgcagcctttcagtcagacgcagccttttggg
tccagaccgcctccggggtcattcccgtcttctgcaagtagtggtctggcaatgggtcct
gtctctggtgcaccacctcaaggctcacttgtaccgccattgggttctcgccctagtcct
gctgcaccatcttcttcacctttgagtatgcccccttccagttcatttggtggtttaatg
agtaatgggccaccagcaccagctttccagagtgctccacgttttccttcccctgttagt
gcaccacagcaaccgcccatgggtcctccaccaacagtggggttggctcgcgcaccgcct
caaagcatgcgccacttaatgggtagttcggggattagtggccagccagttgctcccttt
tcagcaccacctcaagggacaccgttttcagctcagcatgggatggcaccaccaccagta
ggttctcctttcgcaccacagatgcaaccgcagtctgtagctcaacctccaccaattcct
ggttctgctcaaccacctagaatgtttggaatgccaccaccactaccaaatcaaatgact
gctatatcacctgttatgggtcaaactggaagtcctctatcaggagcatcaaagattgat
cccaatcaaattccccggcccattccaggttcctctgtgatcctgcacgatactcgtgcg
gggaatcaggccaacccaccaccgcctgctacaagtgactacattgtttcagacactggg
aattgcagtccacggtacatgaggtgcaccatcaatcagattccatgcacggttgatctg
ttatcaacatctggcatgccgttggctttgttggttcaacctctggcccttcctcatcca
tcagaggatcctgtccaggttgttgattttggagaaagtggtcctgttcgttgttctcgt
tgcaaaggctacataaatccctttatgaaattcattgatcaagggaggcagttcatttgt
aatttgtgtgggtttactgatgagactccccgtgactaccactgcaatctaggtccagat
ggtaggcgtagagatgctgatgaaaggcccgagctatgcaggggaacagttgaatttgtt
gccacaaaagaatacatggtccgtgatcccatgccggctgtgtatttttttcttattgat
gtatccatgcatgccatacaaactggtgcgactgctgcagcttgcagttcaattaatcaa
gttattgctgatcttccggaagggccacggacaatggtgggcattgcaacttttgattca
acaatccatttttacaatctgaaacgggcattacaacagccactgatgcttattgtacct
gatatacatgatgtttatactcctctgcaaactgatgttattgttccggtttccgagtgc
cgtcaacatttagagctattattggatagtattccaactatgtttcagaacagtagaatc
gttgaatcagccttcagtgcagcaatcaaggcagcttttttggcaatgaaaaatactgga
gggaagcttttggtatttcaatcagtcttgccttctgttggcattggagccctttctgct
cgagaggctgagggaagaagtaacatctctgcaggggagaaggaggcccataaattactc
caaccagcagacaaaacattgaaggaaatggcaattgaatttgctgaatatcaggtctgt
gttgatgtgttcatcactacccagacttatgtcgacattgcttctatctctgtcatccct
aaaacaactggagggcaggtttattattactatcctttctctgctgtttctgatccagca
aagctgtacaatgatctcagatggaatgtcacacggcctcaagggtttgaggcagtgatg
cgtgtgaggtgcagccagggcattcaagttcaagaataccatggaaacttttgcaagcgc
attccaacagatattgacctagctgcgattgattgtgacaaaactattatggttacatta
aaacatgatgataagttgcaggatggctcagaatgtgctttccagtgtgccctcctctac
accaccgtgtatggacaaagaagaattcgtgttacaaatttatcattaccatgcacaaac
aatttaagtaatctgttccgcttggctgacttggattcccaatttgtgtgtttcttgaag
caagcggcaagcgaaatcccttccaacccacccttggttatccgagaccgagtgacaaac
ttttgcataaacattctgctttcatatcgcaaattttgtgcgacagtatcatcatcagga
caactcatccttccagaagcacttaaacttctgcccctgtacaccctcgcattaattaaa
agtacaggattgaaactcgatgggaggatagacgatcggtctttttggatcaattatgtt
tcttctgtttctactcctttagcgattccattggtgcaccctaggatgattgcaatccac
gaccttgattcacaggaagcaattggatctcttatcccccctgcacttcctctttctagt
gaatatgtgaatgacaatggagtttatcttcttgagaatggtcaggatgtttcaatatat
attgggaactcggttaatccagatatcttgcaaaaactgtttggcatttcatctgttgct
gaaattccaactcagtatgtcctggagcaatatgacaattcactatcaaagaaactaaat
gatgtggtgaacgagatacgacgccaaagatgttctttcctgcgtttaaagttgtgtaaa
aaaggagatccatcaggaatgacattcttctcatatttggttgaagacaaggttccagct
ggcactctctcctatgtagaatttctagtgcaggtccatcggcaaattcaagtaaaaatg
tcttcataa
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