Populus trichocarpa (black cottonwood): 18111171
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Entry
18111171 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18111171 isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
18111171
Enzymes [BR:
pop01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
18111171
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
18111171
Prokaryotic type
18111171
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
18111171
NCBI-ProteinID:
XP_024452677
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All DBs
Position
3:807225..810956
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AA seq
369 aa
AA seq
DB search
MTEVNPKASPEESPNERPSKISKTLQEEGDSSEEEEEKEAVDKSMKPGLQRYLVAVEYIG
TRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNVCHVDVERISKR
KPGEVLPPHEPAVVRKAVNHFLQKEGDIMVTDVRSVSAHFHARFKAQERTYFYRLLIGPE
LLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSPFRTLEELSVLEV
VSTPYFPSITEREQNSSNGEGPHSFHNKCKTGLPTGSISNGFLAGGSNSGTDLGFGIRRR
HRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSITAASPMAPACGLY
LGHVKYEPL
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagtaaacccaaaagcctcacctgaagaatctccgaacgaaagaccttcaaag
atctctaaaacccttcaagaagaaggagactcgagcgaggaagaagaagaaaaagaagct
gtagataaatcaatgaagccaggacttcaacgttacttggtagctgttgagtacataggc
actcgattctgtggctcccagcaacagcttaatcatagaactgttgttggtgtccttcag
gaggcatttcataaattcattgggcagcctgtaacaatctgtctatccagcaggactgat
gcaggagtacatgcattgtctaatgtttgccatgttgatgtggaacgcataagcaaaagg
aagccaggtgaagtgttaccgcctcacgaaccagcagtagtcagaaaagccgtgaaccat
ttcctgcagaaggaaggtgatattatggtgactgatgttcgaagtgtttcggctcatttc
catgcgagattcaaagctcaagagcgcacgtacttctaccgcttgctgattggaccagag
cttttgtccacctttgaaaaagaccgggcatggcatgtatcagaggagttagatcttgtt
tccatgcaggaagcttgcaaagttcttgttggacatcatgattttagttccttccgggca
tctggttgtcaggcaaaatcaccattcagaaccttagaagaactttctgttttggaggtg
gtttcaactccatattttccatccatcacagaaagagaacagaacagttcaaacggggaa
ggtcctcattcattccataacaagtgtaagactggcttaccaactggatctatttccaat
ggttttttggcagggggctccaatagtggaactgatttaggttttgggataaggagaagg
catcgctgctatgtcataacagctcgttctcgctcttttctctaccaccaggttagactg
cttgttggtgttcttaaatctgtgggcactggagatctaacagtttcagatgttgaaaga
atactgaatgccaggtctattactgctgcaagtcctatggctcctgcatgtggtctctac
ctcggacatgttaagtatgagccgctgtga
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