Populus trichocarpa (black cottonwood): 7453542
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Entry
7453542 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: cell division cycle 20.2, cofactor of APC complex
KO
K03363
cell division cycle 20, cofactor of APC complex
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7453542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7453542
03036 Chromosome and associated proteins [BR:
pop03036
]
7453542
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
7453542
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid separation proteins
APC/C complex
7453542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
WDR55
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Ge1_WD40
Beta-prop_VPS8
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_RIG_1st
RMC1_N
WDR54
Tricorn_2nd
CFAP43_N
Beta-prop_IFT80_2nd
DPPIV_N
Motif
Other DBs
NCBI-GeneID:
7453542
NCBI-ProteinID:
XP_052305244
LinkDB
All DBs
Position
19:3336455..3338690
Genome browser
AA seq
507 aa
AA seq
DB search
MDAGSMNTSSSLKAQSRFPLQQQFLPRTNSKENLDRFIPNRSAMDMDYARFMLTEGRKGK
ENPTVNSPSREAYRKQLADSLNMNRTRILAFKNKPPAPVELMPQDHSHHHHQPKTAKPRR
HIPQTSERTLDAPDLVDDFYLNLLDWGSSNVLAIALGSTVYLWDASDGSTSELVTVDDED
GPVTSVNWAPDGRHIAIGLNNSHIQLWDSASNRQLRTLKGGHRSRVGSMAWNNHILTTGG
MDGQIINNDVRIRSHIVETYRGHTQEVCGLKWSASGQQLASGGNDNLIHIWDRSTALSNS
ATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGGGDKSIKFWNTHTGACLNSIDTGSQVC
SLLWNKNERELLSSHGFTQNQLTVWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVATAAG
DETLRFWNVFGVPEIAAKAAPKANXRAIFSLESHSLILKSKQKTKLPPVCICLTRPTTSR
GKQQLVVRRDSAIIWLHISSSDTLLSN
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaggatctatgaacacttcttcaagcttgaaagcacaatctcgtttccctctt
caacagcagtttcttccaagaacgaactctaaagaaaacttggatagatttataccaaac
aggtcagccatggatatggattatgcccgtttcatgctaacagaagggagaaaaggaaaa
gagaacccaacagtgaactcgccgtcaagagaggcttacaggaagcaacttgctgattcc
ttgaacatgaacagaactcgaattctagctttcaagaacaagcctcctgcacctgttgag
ttgatgcctcaagaccactctcatcaccaccaccagcccaaaacagccaagcctcgccga
catattcctcagacttctgagaggacattggatgcaccggatcttgtggatgatttctac
ctcaatttattggattggggcagcagcaatgttttagccatagctcttggaagcactgtt
tatttgtgggatgcttcagacggttctacctcagaattggtcacggttgatgatgaagat
ggacccgttaccagtgtcaattgggctcctgatggacgccatattgccataggcttgaac
aattctcatatacagttatgggattctgcttccaatagacagctaagaacattgaaagga
ggccacagatcgcgagttgggtcaatggcatggaacaatcacatcctgacaacaggggga
atggatggtcaaatcattaacaatgacgtgagaattagatcacacattgttgagacttac
agagggcatacacaggaggtttgtgggcttaaatggtccgcttcaggtcaacaattagca
agtggaggcaatgataatctaattcatatatgggatagatctacagcattatcaaactca
gcaacacagtggcttcacaggcttgaggaccatacttcagcagtgaaagccctggcatgg
tgtcctttccaagggaatttgctagcctctggaggaggtggaggagataagagtattaag
ttttggaatacacatacaggtgcctgcttgaactcgattgataccggatctcaggtttgt
tctcttttgtggaacaagaatgaaagggaactacttagctctcatgggtttactcagaat
caactcactgtttggaaatatccatcaatggtgaaaatggcagagctcactggccatact
tctagagtcctttacatggctcagagtccggatggttgcacagtggcaacagcagcaggg
gatgaaacactcagattctggaatgtttttggggttcctgaaattgctgctaaggccgct
cctaaagcaaatnccagagccattttctcacttgaatcgcattcgctgattctgaaatca
aaacagaaaaccaagctgcctcctgtgtgcatatgtttgaccagaccgaccacttccagg
ggaaaacaacaacttgttgtcaggagggatagcgcaatcatttggctccacatttcatca
tccgacacccttctctccaattaa
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