Populus trichocarpa (black cottonwood): 7453645
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Entry
7453645 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3 isoform X2
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7453645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7453645
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
7453645
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
HECT type E3
7453645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Arm
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
7453645
NCBI-ProteinID:
XP_002305515
LinkDB
All DBs
Position
4:18996758..19006110
Genome browser
AA seq
1877 aa
AA seq
DB search
METRSRKRAEASSSAATTTSPTTRPNKRSRTATTTTATATRSRSTRAHPLPMDSTPVESS
SSSRSRRNRNNNSNSESDKGKEKEHEVRVSRENREINNNLDSGNDNNNLNVDDDDDSEGG
GIGAFHHNLTSASSALQGLLRKLGAGLDDLLPSPVTGSGSSSHQSGRLKKILSGLRADGE
EGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPILVGLLNNESNPDIMLLAARAITHLCD
VLPSSCAAVVHYGAVSCFVARLITIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLS
YLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTR
IAEAFASSPDKLDELCNHGLVAQAASLISTSSSGGGQASLNAPTYTGLIRLLSTCASGSP
LGAKTLLLLGVSGILKDILLGSAGSAISSVPPALSRPADQVFEIVNLANELLPPLPQGTI
SLPTSSSMLAKGSVVKKSPSSSSGKQDDNNGNVPEVSAREKLLNDQPELLQQFGMDLLPV
LIQIYGASVNSPVRHKCLSVIGKLMYFSNAEMIQSLLNVTNISSFLAGVLAWKDPHVLVP
ALQIAKIIMEKLPGTFSKMFVREGVVHAVDQLILAGSPNTGPTQAASAEKDNDSVPGSSS
RSRRYKRRSGNSNPEANSSEESKTQVCANAGSPPSSIEIPTVNSNLRLAVSACAKDFRDK
HFPSDPGAAEVGVTDDLLHLKNLCTKLNAGVDDQKTKAKGKSKASASHLIDNSANKEEYL
IGVISEMLAELGKGDGVSTFEFIGSGVVATLLNYFSCGYFTKERISEANLPKLRQQALRR
FKSFVALALPSSIDGGGATSMTVLVQKLQNALSSLERFPVVLSHSSRSSSGGARLSSGLS
ALSQPFKLRLCRVQGEKGLRDYSSNVVLIDPLASLAAVEEFLWPRVQRNETGQKVSESAG
NSESGTTHPGAGASSPSTSTPATATRRHSSRSRSSVNIGDSARKEPIPEKSTSSSKGKGK
AVLKPAQEETKGPQTRNAARRRAALDKDAELKPVNGDSSSEDEELDISPVEIDDALVIED
DDISDDDDHEDVLRDDSLPVCMPDKVHDVKLGDTPEDSNVAPAASDSQSNPASGSSSRAA
AVRGLDSTDFRSSYGSRGAMSFAAAAMAGLGSANGRGIRGGRDRQGRPLFGSSSDPPKLI
FTAGGKQLNRHLTIYQAIQRQLVLEDDDEDRYGGSDFISSDGSRLWSDIYTIAYQRADGQ
ADRASVGGSSSSTSKSTKGGPSNSNSDAQMHRMSLLDSILQAELPCDLEKSNPTYNILAL
LRILEALNQLAPRLRVQLLSDNFSEGKISSLNELTATGARVPAEEFVNSKLTPKLARQIQ
DALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALFRLQQLQGADGHGST
NEREVRVGRLQRQKVRVSRNRILDSAAKVMDMYSSQKAVLEVEYFGEVGTGLGPTLEFYT
LLSHDLQKVSLGMWRSNSAAGKPSMEIDGDDEKNGKSNNGSGTAVAADLVQAPLGLFPRP
WPPTASASEGSQFYKTIEYFRLVGRVMAKALQDGRLLDLPLSMAFYKLVLGQELDLYDFL
SFDAEFGKTLQELHALVRRKQYLESISAENNEVNADLCFRGTPIKDLCLDFTLPGYPDYM
MKPGDETVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDISSLQIFTPQELDYL
LCGRRELWELETLVDHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPP
GGLAVLNPKLTIVRKHSSSAGNAMLNGTGPSESADDDLPSVMTCANYLKLPPYSTKEVMH
KKLLYAISEGQGSFDLS
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgtagccggaaacgggcggaggcctcctcatctgccgccaccaccaccagt
cctactactcgccctaacaaacgatcccgcactgccacaacaacaaccgccaccgctact
cgctctcgttccacacgtgctcaccctctccccatggactccacacctgtcgaatcgtct
tcttcttctcgctctcgtcggaataggaataataatagtaacagtgaatcggataaaggc
aaagagaaagaacatgaagttagggtttcgcgtgaaaatagggaaattaacaataatttg
gattctggaaatgacaataataacctcaatgtcgacgacgatgacgacagcgaaggtggt
ggaattggtgctttccatcataatctgacttcagctagtagtgccttacagggtttgttg
agaaagttgggtgctggtcttgatgatttgttgccttctcccgtgacgggttcaggttca
agctcgcatcaatcggggagattgaagaagattctgtctgggttgagggctgatggagaa
gaagggaagcaagtggaagccttaacgcagctctgtgaaatgctttctattgggactgaa
gagagtctgagcactttttccgtggattcttttgttccgattcttgttggtttgttgaat
aatgagagtaatcctgatattatgttgcttgctgcaagggcgattacacatttgtgtgat
gttttgccatcgtcttgtgctgctgttgttcattatggcgctgtttcatgttttgttgca
aggttgattactattgagtacatggaccttgctgaacagtctctgcaagctctaaagaaa
atatctcaagagcacccaactgcatgtctgcgtgctggtgctcttatggcagtgctttct
tatctggattttttctcaactggagttcagcgagtagcattatcgactgctgcaaatatg
tgcaagaaacttccttcagatgcagctgactttgtgatggaagcagtccctctgttgacc
aaccttcttcagtaccacgatgcaaaggtcttggagcatgcttcagtttgtttgacaagg
attgccgaagcctttgcttcatcaccagacaaattagatgaattgtgtaatcatggactt
gttgctcaagctgcctctctcatttccaccagtagttccggtggtggacaggcatctctc
aatgctccaacatatacgggcttaattcgactgctatccacatgtgcaagtggctctcct
ttaggagccaaaacattacttcttcttggggtcagtggcattcttaaagatatactatta
ggttctgcgggttctgctatctcctctgttcctccggctctaagtagaccagcagatcag
gtttttgagattgttaatctggcaaatgagcttcttcctccacttccacaaggaactatc
tccctccctacgagctccagtatgttggccaaaggatctgttgtgaagaagtctccatcc
agcagttctgggaaacaagatgataataatggaaatgttcctgaggtttcagctcgtgag
aaattattaaatgatcaaccagaacttctgcagcaatttggaatggatcttcttcctgtt
ctgatacagatttatggtgccagtgtcaacagtcctgttcgccacaaatgtctctcagtt
attgggaagttgatgtacttcagcaatgcggagatgattcagtctctacttaatgtgaca
aacatatcaagttttctagctggggtgttagcgtggaaagatccacacgtcttggttcct
gcccttcaaattgccaagattattatggaaaaacttcctgggactttctccaagatgttt
gtcagagaaggtgttgttcatgctgtagatcaacttatcttagctggaagtccaaatact
ggtcctacccaagctgcttctgctgagaaggataacgattctgttcctggatcatcatca
cgttccaggcgttacaaacgtcgcagtgggaattcaaatcctgaggcaaattcatctgaa
gaatccaagactcaagtttgcgcaaatgctggatcacctccaagttctatagaaatccca
accgttaattctaatttgcgtttagcagttagtgcgtgtgctaaagattttagagataag
cactttccttcggatcccggagctgctgaagttggggttaccgatgacctgttacacttg
aaaaatctctgcacaaagttgaatgctggtgttgatgaccaaaagactaaagcaaagggc
aaatcaaaggcttctgcttcccatcttattgacaattctgctaataaggaagaatacttg
attggggtgatatccgagatgctagcagagctaggcaagggggatggtgtatccactttt
gagtttattggtagtggtgttgtggcaaccttgctaaattatttttcttgtggctatttt
accaaggagagaatttcagaagccaacctacccaaacttcggcaacaagcactgagaaga
tttaaatcatttgttgctctggcccttccttccagtattgatggagggggtgccacctcc
atgacagtcttagttcagaagcttcaaaatgctttgtcatccttggagcgttttcctgtt
gttcttagccattcttctaggtcatccagtggaggtgcacgcctgtcttctggattgagt
gcactatctcaaccttttaagttacgtctctgtcgggtccaaggggaaaagggtctccgt
gattactcttccaatgttgtacttattgatccattagcaagtttagctgctgtagaagaa
tttctttggccgcgagtacagcgaaacgaaactggccaaaaggtgtctgaatctgcagga
aactcagaatcggggaccacacaccctggagctggtgcatcatccccttctacctcaact
cctgctactgccactcgtcgtcactcttcaagatcccgatcatctgttaatataggagat
tcagctagaaaggaaccaataccagagaaaagcacaagctcatcaaagggaaaggggaaa
gctgttttgaaaccagctcaggaggagacaaaaggacctcaaactagaaatgctgctcgt
agaagagcagcccttgataaagatgcagaattgaaaccggtgaatggggattctagttct
gaggatgaggaattggatatttctcctgtggagattgatgatgcgttggtgattgaagat
gatgacatctccgacgatgacgaccatgaagatgtgctaagagatgattctcttcctgtt
tgcatgcctgacaaagtacatgatgtgaaattgggtgatacaccggaggatagcaatgtt
gcaccagcagcaagtgacagccaaagtaaccctgcttctggttctagtagcagggctgct
gctgttaggggcttggattccactgattttaggagctcttatggatctaggggagctatg
tcttttgctgctgctgccatggctgggcttggatctgctaatggtagaggtatcagagga
ggaagagatcgacaaggacgtcccctgtttggtagctctagtgaccctcctaagttgatc
tttactgctggtgggaagcagctaaataggcatttgactatctatcaggctatccagaga
caacttgtgctggaagatgatgatgaagacaggtatggtggcagtgacttcatctctagt
gatgggagtaggctttggagtgatatatataccattgcatatcaaagggcagatggccaa
gctgatagggcttctgttggaggctcaagttctagcacatcaaagtccaccaaaggtggc
ccttccaattcaaactcagatgctcaaatgcatcggatgtcacttttagatagcatcttg
caagcggaacttccttgtgatctagaaaaatctaatcctacttataatatattggctcta
ctacgtatacttgaggctttgaaccagcttgcacctcgtttgagagttcaactactttct
gacaacttctccgaggggaaaatctctagtttgaatgagttgactgctactggtgccagg
gttcctgcagaagaattcgtaaatagcaagctcacacctaaattagctcgacaaattcag
gatgccctggcactgtgcagcgggagccttccatcatggtgttatcagttaacaaaagca
tgtccattcttgttcccttttgagactcggcgacagtacttctattcaactgcttttgga
ttatctcgtgcgttgtttcgtcttcagcagctgcagggtgcagatggtcatgggtcaaca
aatgaaagagaggtgagggttggaagattacaacgccagaaagttcgtgtttcccgaaac
cgcattttggattctgctgcgaaagtaatggatatgtattctagtcagaaggctgtgctt
gaagtagaatattttggcgaggttggcactgggttgggtcctaccttagagttctacacg
cttttgagtcatgatctacagaaagtttctctgggaatgtggaggtcaaattcagcagca
gggaaaccttcaatggaaattgatggagatgatgaaaaaaatggaaaatccaacaatggg
tcaggtactgcagttgctgctgatcttgtccaagctccacttggcctgttccctcgtcct
tggccaccaaccgctagtgcttctgaagggagccaattttataagactattgagtatttc
cggctggtcggacgggtgatggccaaagctcttcaagatgggcggcttttggacctacca
ctttcaatggcattttataaacttgtgcttggtcaagagcttgatctgtatgattttctt
tcgtttgatgctgaatttgggaagactttacaagaattgcatgcccttgttcgtcgaaaa
caatatttagaatcaataagcgctgaaaataatgaggtcaatgctgatttatgttttcgt
gggaccccaattaaagatctctgcttggattttactcttcctggttatccagactacatg
atgaagccaggagatgaaactgttgatatcaataacttggaagaatacatatccttggta
gttgatgcaactgtgaagactgggatcatgcgacaaatggaagcgtttagagctgggttc
aatcaggtttttgacatctcatcattgcaaatattcactccgcaagaattggattatttg
ctttgtgggcgaagagaactgtgggagttggagacacttgttgatcatataaaatttgat
catggatacactgccaagagtccagccattgttaacctgcttgagattatgggagagttc
acaccagagcagcagcgtgctttttgccagtttgttactggagcacccaggctgccacct
ggtggtctggctgtgctaaacccaaaattaaccattgttagaaagcattcttcatctgct
ggaaatgcaatgttgaatggaactgggccttcagaatcagctgatgatgacttgcctagt
gtcatgacttgtgctaattacctaaagctaccaccttactctaccaaggaagtcatgcac
aagaaattgctgtatgcaatcagtgaagggcagggatcttttgacttgtcatga
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integrated database retrieval system
