KEGG   Populus trichocarpa (black cottonwood): 7453709
Entry
7453709           CDS       T01077                                 
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    7453709
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7453709
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     7453709
SSDB
Motif
Pfam: TFIIF_alpha zf-C3HC4_3 DZR_2 Ribosomal_S27e
Other DBs
NCBI-GeneID: 7453709
NCBI-ProteinID: XP_024443955
LinkDB
Position
16:795042..799248
AA seq 539 aa
MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYN
VRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWLL
EDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYNFNKVAHYKQLTLEEAEEKM
KNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVSDR
GEEDEEEEAGRKSRLGLNKQGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV
AIDPEEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGKANGLNESDVED
DDDDEDMDDDISPVLAPKQKDVVPKEEAADISPAKPTPSGSAKGTPSTSKSAKGKRKLNG
EDAKSSNGAPVKKVKTENQEVKPAVKEESSPATKGTATPKVTPPSSKTGSTSGSTGPVTE
EEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNYVVLRDK
NT seq 1620 nt   +upstreamnt  +downstreamnt
atgtcgttcgatcttctgttaaagccgtcgtgtagcggctgcggcagcaccacagatttg
tacggaagcaattgcaagcatatgacgctttgcttgaattgcggcaaaacaatggcggag
aatcgcggcaaatgcttcgattgtggcactactgtcagtcgcttgattcgagagtataat
gttagggcgagtacgagtagcgacaagaattattttataggaagattcgtgacaggattg
ccgagtttttccaagaaaaaaaatgcggaaaataaatggtctttgcacaaagaaggaatc
cttggtcgtcagattactgatgctttgagggagaagtttaagaataagccttggctattg
gaggatgagactgggcagtctcagtatcagggtcatcttgaagggtcgcaatcggcgact
tattatctgttgatgatgactgggaaagagtttgttgctattcctgctggttcatggtac
aactttaacaaggtagcgcattataagcaacttacgttggaggaagcagaggagaagatg
aagaataggaggaagactgcggatgggtatgaaaggtggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaggtggagaaggtagatgataaggagggtgtttcagctggc
gggagaggtgggcgtcggaaagcaagtggtgatgatgatgagggaaatgtgtctgacagg
ggagaggaagatgaagaggaggaggcaggaaggaagagtagactcggactcaataaacag
ggtggtgatgatgatgaagaaggtccaagaggaggtgatcttgatatggatgatgatgat
attgagaagggtgatgattgggagcatgaagaaattttcaccgatgatgatgaagctgtc
gccattgatcctgaggaacgggaggatttggccccagaagttcctgctcctcccgaaatc
aagcaggatgaagatgatgaggatgaggagaatgaggagggaggactgagtaaatctggg
aaagagttgaagaagctactagggaaagcaaatggtctaaacgagtcagatgtagaagat
gacgatgacgacgaggatatggatgatgatatttctccggttctggctccaaagcagaag
gatgttgtgccgaaggaggaagctgctgacattagtcctgcaaaaccaacaccttcaggt
tctgctaagggaaccccttctacctccaagtctgccaaggggaaaagaaaattgaatggt
gaagatgcaaaatcttccaatggtgcacctgtgaagaaggtgaagacagaaaatcaggaa
gtaaaacctgccgtgaaagaagaaagctcgcctgctactaaaggtactgcaactcctaaa
gtaacaccgccatcatcaaaaacagggtcaacatcaggttctactggtcctgtcactgaa
gaagagatcagggctgttttgttgcaaaatgggcctgttaccacacaggatctggttgct
aggtttaaatcacgactaaggactcctgaggacaagaaagcttttgcagatattctgagg
agaatttctaagattcaaaagaccagtggatctaactatgttgtgctgagggacaaatga

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