Populus trichocarpa (black cottonwood): 7453709
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Entry
7453709 CDS
T01077
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7453709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7453709
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
7453709
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
7453709
NCBI-ProteinID:
XP_024443955
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All DBs
Position
16:795042..799248
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AA seq
539 aa
AA seq
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MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYN
VRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWLL
EDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYNFNKVAHYKQLTLEEAEEKM
KNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVSDR
GEEDEEEEAGRKSRLGLNKQGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV
AIDPEEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGKANGLNESDVED
DDDDEDMDDDISPVLAPKQKDVVPKEEAADISPAKPTPSGSAKGTPSTSKSAKGKRKLNG
EDAKSSNGAPVKKVKTENQEVKPAVKEESSPATKGTATPKVTPPSSKTGSTSGSTGPVTE
EEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNYVVLRDK
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatcttctgttaaagccgtcgtgtagcggctgcggcagcaccacagatttg
tacggaagcaattgcaagcatatgacgctttgcttgaattgcggcaaaacaatggcggag
aatcgcggcaaatgcttcgattgtggcactactgtcagtcgcttgattcgagagtataat
gttagggcgagtacgagtagcgacaagaattattttataggaagattcgtgacaggattg
ccgagtttttccaagaaaaaaaatgcggaaaataaatggtctttgcacaaagaaggaatc
cttggtcgtcagattactgatgctttgagggagaagtttaagaataagccttggctattg
gaggatgagactgggcagtctcagtatcagggtcatcttgaagggtcgcaatcggcgact
tattatctgttgatgatgactgggaaagagtttgttgctattcctgctggttcatggtac
aactttaacaaggtagcgcattataagcaacttacgttggaggaagcagaggagaagatg
aagaataggaggaagactgcggatgggtatgaaaggtggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaggtggagaaggtagatgataaggagggtgtttcagctggc
gggagaggtgggcgtcggaaagcaagtggtgatgatgatgagggaaatgtgtctgacagg
ggagaggaagatgaagaggaggaggcaggaaggaagagtagactcggactcaataaacag
ggtggtgatgatgatgaagaaggtccaagaggaggtgatcttgatatggatgatgatgat
attgagaagggtgatgattgggagcatgaagaaattttcaccgatgatgatgaagctgtc
gccattgatcctgaggaacgggaggatttggccccagaagttcctgctcctcccgaaatc
aagcaggatgaagatgatgaggatgaggagaatgaggagggaggactgagtaaatctggg
aaagagttgaagaagctactagggaaagcaaatggtctaaacgagtcagatgtagaagat
gacgatgacgacgaggatatggatgatgatatttctccggttctggctccaaagcagaag
gatgttgtgccgaaggaggaagctgctgacattagtcctgcaaaaccaacaccttcaggt
tctgctaagggaaccccttctacctccaagtctgccaaggggaaaagaaaattgaatggt
gaagatgcaaaatcttccaatggtgcacctgtgaagaaggtgaagacagaaaatcaggaa
gtaaaacctgccgtgaaagaagaaagctcgcctgctactaaaggtactgcaactcctaaa
gtaacaccgccatcatcaaaaacagggtcaacatcaggttctactggtcctgtcactgaa
gaagagatcagggctgttttgttgcaaaatgggcctgttaccacacaggatctggttgct
aggtttaaatcacgactaaggactcctgaggacaagaaagcttttgcagatattctgagg
agaatttctaagattcaaaagaccagtggatctaactatgttgtgctgagggacaaatga
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integrated database retrieval system