Populus trichocarpa (black cottonwood): 7453784
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Entry
7453784 CDS
T01077
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7453784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7453784
03009 Ribosome biogenesis [BR:
pop03009
]
7453784
04131 Membrane trafficking [BR:
pop04131
]
7453784
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7453784
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
7453784
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
7453784
Membrane trafficking [BR:
pop04131
]
SNARE
SNARE associated proteins
Others
7453784
Autophagy
Aggrephagy
Other aggrephagy associated proteins
7453784
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
7453784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
CDC48_2
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
Vps4_C
AAA_17
AAA_18
ATPase_2
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
AAA_lid_PRS2_C
NACHT
NB-ARC
TsaE
AAA_24
ResIII
DUF815
Zeta_toxin
Sigma54_activ_2
Zot
Motif
Other DBs
NCBI-GeneID:
7453784
NCBI-ProteinID:
XP_002321618
UniProt:
B9IEV5
LinkDB
All DBs
Position
15:10644677..10649341
Genome browser
AA seq
813 aa
AA seq
DB search
MEDPSSSQPSSSTDPKSGKKDFSTAILERKKSPNRLVVDEAINDDNSVVAMHPATMEKLQ
FFRGDTVLIKGKKRRDTVCIVLAEEQCEEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKY
GKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKDDLFLVRGGMRSVEFKVIETDP
GEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK
SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE
EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN
SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLEKVAKDTHGYVGADL
AALCTEAALQCIREKMDVIDLEDDTIDAEVLNSMAVTNEHFRTALGTSNPSALRETVVEV
PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI
ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG
DAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEA
SRLQIFKACLRKSPVSKDVDLTALARYTNGFSGADITEICQRACKYAIRENIEKDIEKEK
RKQENPEAMEEDDVDEVPEIKAAHFEESMKYARRSVSDADIRKYQSFAQTLQQSRGFGTE
FRFPDRPENAADGGAADPFASATTAADEDDLYS
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggaggatccaagctctagccagccctcctcttccactgacccgaaaagtggtaagaaa
gatttttcgactgcgattttagagcgaaagaagtctcccaatcgtcttgttgttgacgag
gcgatcaatgatgataactctgtggttgctatgcatcctgctacaatggagaagcttcag
ttttttcgtggtgacactgtgctaattaagggaaagaagcgtagagacactgtttgcatt
gttcttgctgaggaacaatgtgaggaaccaaaaatcagaatgaacaaagttgtcagggct
aatcttagagtccgtcttggtgatgttgtgtctgtccatcaatgtcctgatgtgaagtat
gggaagcgggttcatatccttcctattgatgacactattgagggtgttactggcaatctt
tttgatgcatatttgaagccatatttcttggaatcttaccgccctgttaggaaagatgac
cttttccttgtcaggggtggcatgcgcagtgtcgagttcaaagtaattgagacagaccct
ggtgaatactgtgttgtggcaccagataccgagatcttttgtgaaggagagcccatcaaa
cgcgaggatgaagagagattgaatgaagtgggctatgatgatgttgggggtgttaggaaa
caaatggctcagattcgtgagctagttgagcttcctcttagacacccacagcttttcaaa
tcaattggtgtgaaaccaccaaaaggtatattgctgtatggaccacctgggtccggtaaa
actctgattgcaagagctgttgctaatgagacaggggcattcttctttttgattaatggt
cctgagataatgtcaaagctggctggtgagagtgaaagcaacctgaggaaggcgtttgaa
gaagctgaaaagaatgcaccatccataatttttatcgatgagatagattctattgctcct
aagagggaaaagactcatggtgaagtggagaggcgtatagtttcacaacttttgacttta
atggatggccttaagtcacgggcacatgtgattgttatgggggctaccaataggcccaat
agcattgatccagctttgaggagatttgggagatttgatcgagagattgacattggtgtg
ccagatgaagttggacggttggaggtcctcagaattcatactaaaaatatgaaacttgct
gaagaggttgatcttgaaaaagttgcaaaggacacccatggttatgttggtgcagatctt
gcagctctttgtactgaggcagctcttcagtgtattagggagaaaatggatgttattgat
ttggaggatgacacaattgatgccgaggtgttaaactcaatggctgtgactaatgagcac
ttccgaactgcattgggaacttcaaatccatcagccttgcgtgaaacagttgtggaggtt
cctaatgtctcatgggaggatattggtggattggagaatgttaaaagagagcttcaagag
actgtccaatatccagtggagcatcctgagaagtttgagaaatttggcatgtcaccttct
aaaggtgttctcttttatggacctcctggctgtggtaaaaccctacttgcaaaggcaatt
gctaatgaatgccaggccaacttcattagtgtcaagggtcctgagcttctaaccatgtgg
tttggagaaagtgaagcaaatgtgcgggagatattcgacaaagcacggcagtcagcccca
tgtgtacttttctttgacgaacttgattccattgctactcagcgtggcagctctgtagga
gatgctgggggtgctgctgatagagtcttgaatcaacttctgacggaaatggatggcatg
acagcaaagaaaacagtttttatcattggagcaacaaacaggccagatattatcgaccca
gcattgcttaggcccgggcgtctggaccagttgatttatattcctcttccggacgaggct
tcccgtcttcagatatttaaagcatgtttgcggaagtcacctgtttctaaggatgttgac
ctgacagctcttgcacgatatactaatggttttagtggtgctgatatcactgaaatttgt
caacgtgcctgcaaatatgccattagagaaaatattgagaaggatattgagaaggagaaa
aggaagcaagagaatcccgaagcaatggaagaggatgatgttgatgaggtcccagaaata
aaggcagcacattttgaggagtcaatgaaatatgcacgacgaagtgtcagtgatgcagac
atcaggaagtaccaatcttttgctcagaccttgcagcaatctcgcggatttggtactgag
ttccggtttccagaccgtcctgagaatgctgcagatggaggagctgcagatccttttgct
tcagcaactaccgctgccgatgaggatgatctatacagctga
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