Populus trichocarpa (black cottonwood): 7453797
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Entry
7453797 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7453797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7453797
03009 Ribosome biogenesis [BR:
pop03009
]
7453797
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7453797
Spliceosome [BR:
pop03041
]
Complex A
U1 snRNP components
U1 related factors
7453797
Complex B
7453797
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Helicases
7453797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
7453797
NCBI-ProteinID:
XP_002322195
UniProt:
B9IEX8
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All DBs
Position
15:complement(10827671..10831818)
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AA seq
609 aa
AA seq
DB search
MNPYDNRYSDPDSYRHRHHRSDLMGQKTPVVPTMIGPVPHGGGAGVPPPPSFAGRGGPPP
VGGGYPAFERPSSGFSVGRGGGGGGRGFSGGRGSNFHGGDRRNDAGRGRGWNSGSGRGGG
GGRGGRFGGGDPRRELDNIALPKQDFGDLVPFEKNLYFENPSIRAMSEHEVVTFRARREI
TVEGHDVPRPIRIFHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGS
GKTLAYLLPAFVHVAAQPRLVHGDGPIVLVLAPTRELAVQIQEEALKFGSKANIRSTCIY
GGAPKGPQIRDLQRGVEIVIATPGRLIDMLGAQHVNLRRVTYLVLDEADRMLDMGFEPQI
RKIVSQIRPDRQTLYWSATWPREVEALARHFLHNPYKVIIGSQDLKANQSIKQVVEVMMD
LEKYKRLIKLLKEVMDGSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVL
AEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGARGTALTF
FTESNAKFARDLIKILQEAGQIVPPSLSAMTRSAGSFGGNFRSRGRGGFGNRGMISGSNT
VPLGAGRPW
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaacccttacgacaaccgctactccgaccctgactcttaccgtcaccgtcaccatcgc
agtgacttaatgggccaaaaaactccagtggtacccacaatgatagggcctgttcctcat
ggcggtggtgctggggttcctccgcctccgtcttttgcgggtagaggcggtccccctcca
gttggtggaggttatcctgcttttgagcgaccttctagtggattcagtgttggacgaggg
ggtggaggaggaggaagggggtttagtggtggccgagggtctaattttcatggtggggat
agaagaaatgatgctggccgtgggagaggctggaattctggttctggccgtggtggtggt
ggtggaagaggggggaggtttggagggggagatccaaggagagagttggataatattgca
cttccaaagcaggattttggggacttggtgccttttgagaagaacttatacttcgagaat
ccttctattagggctatgtcggaacatgaagtggttacgtttcgtgctagaagagaaatt
actgttgaaggtcatgacgtgcctaggcctattcgaatttttcacgaggccaatttccct
gattactgcttacaggtgattgctaagttgggttttgttgagccaacgccaattcaagct
caagggtggccaatggctctaaagggtagagatctaattggcattgctgagactggttct
ggtaagacactggcatatctgctaccagcttttgtgcatgttgctgctcagcctcgattg
gtacatggtgatggtccgattgtgttagtattagctcctacaagagagctggcagttcag
attcaagaagaagctttgaagtttggttcaaaggcgaatattaggagcacatgcatatat
ggcggtgctcccaagggaccccaaattcgtgatcttcaaagaggtgttgaaattgttatt
gctacccctggtcgactaatagatatgttgggagctcaacacgtgaatttgcgaagagtc
acatacctagtgttggacgaggctgatcgcatgttggacatgggctttgagcctcaaatt
aggaaaattgtatctcagattcgaccagataggcagacattgtattggagtgcaacatgg
cccagggaggttgaagctttagcaaggcattttttgcataatccatacaaggttatcata
ggatcgcaagatttaaaagcaaaccagtctataaagcaagttgttgaagtcatgatggac
ctggagaagtacaaacggctgatcaaactgctgaaagaagtgatggatggaagtcgaatt
ctaatattcatggagacaaaaaaaggctgtgaccaagttacaaggcagttgagaatggat
ggatgggcagctttgtccatccatggtgataaaaaccaggctgaaagggattgggtcctg
gcggagttcaaaagtggcagaagccctataatgactgccactgatgttgctgcacggggc
cttgatgtgaaggacataaaatgtgtggtcaactatgattttccttccagccttgaggat
tatgttcacaggataggccgaactggtcgagcaggagctaggggaactgccctaaccttt
ttcacagagtcaaatgcaaaatttgctagggatcttattaaaattctgcaagaagcaggg
cagattgtgcccccgtcattgtctgctatgactcggtcagctggttcttttggaggtaac
ttccgttccagaggaagaggcggcttcggcaaccgggggatgatttcaggatccaatacc
gtgccacttggtgctggtagaccttggtaa
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