Populus trichocarpa (black cottonwood): 7453857
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Entry
7453857 CDS
T01077
Name
(RefSeq) heparanase-like protein 1 isoform X1
KO
K07964
heparanase [EC:
3.2.1.166
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00531
Glycosaminoglycan degradation
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
7453857
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pop00536
]
7453857
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.166 heparanase
7453857
Glycosaminoglycan binding proteins [BR:
pop00536
]
Heparan sulfate / Heparin
Enzymes
7453857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_79n
Motif
Other DBs
NCBI-GeneID:
7453857
NCBI-ProteinID:
XP_006374165
UniProt:
B9IE10
LinkDB
All DBs
Position
15:complement(5146208..5151788)
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AA seq
539 aa
AA seq
DB search
MEFSFSLLLFLASFPVILAQEGTRATISIDGTIAVAVIDDNFICATLDWWPHDKCNYNQC
PWSYSSVTNLDLSHPLLAKAIQAFRNLRIRIGGSLQDQVLYDVESLKAPCHPFRKMKGGL
FGFSKGCLHMNRWDELNHLFSRTGAIVTFGLNALYGRHQIRKGVWGGAWDSSNACDFMNY
TVLKGYKIDSWEYGNELSGSGVSASVSAELYGKDLIKLKDVVNNLYKNSDLKPSLVAPGG
FFDKQWYAKLLQVTGSGIVNFVTHHIYNLGAGMDPNLVNKILDPHYLSKVSETFSNLSQT
IQQNGPWASAWVGESGGAYNSGGRHVSDTFVNSFWYLDQLGMASRYNTKVYCRQTLVGGH
YGLLNTTTLVPNPDYYSALLWHRLMGKGVLAVGSNASPFLRSYAHCSKGRAGITLLLINL
SNQTDFIISVQNSMDMRLTVEENISGENSFVRGLKRSVSWVGSRASDEPLYREEYHLTAK
DGNLQSRTMVLNGIPLELTEDENIPSLDPVRLDVNSPLYINPLSISFIVFPNFDAPACA
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggaatttagcttctccctccttttgtttttggcttctttccctgtgattctggctcaa
gaaggaacacgtgctacaatttctattgatggaactattgcagttgctgtaatcgatgat
aattttatttgtgctactcttgattggtggccgcatgataagtgtaactacaaccagtgt
ccatggagctattcatccgtaacaaacttggacttatctcatcctcttcttgccaaagcc
atccaagccttcaggaatttgagaataagaattggaggttctttgcaagaccaagtattg
tatgatgttgaaagtttgaaagctccttgccatccatttagaaagatgaaaggtgggctc
tttggtttttcaaagggctgtttacatatgaaccggtgggatgaactgaaccatttattc
agtagaactggggccattgtgacatttggtttgaatgccctctatggaaggcaccagatt
aggaagggtgtttggggaggagcttgggattctagtaatgcttgtgatttcatgaactac
actgtcttgaaaggatacaagatagattcgtgggaatatgggaatgagttgagtggaagt
ggtgtaagtgcaagtgtaagtgctgagctttatgggaaagatttgatcaaacttaaagat
gttgtcaacaatttgtataaaaactctgatctgaaaccttcactagtagcaccgggagga
ttttttgacaagcagtggtatgctaagcttcttcaggttacaggttcaggcatagtcaac
tttgtaactcatcatatatacaacttgggagcaggcatggatcccaaccttgtgaataag
atattggatccccattatttgagcaaggtatcagaaaccttcagtaatctttcacaaacg
attcaacagaatggtccttgggcttctgcttgggttggggaatctggtggggcctataac
agtggtggtcgtcatgtttctgatacatttgtgaacagtttctggtacttagatcagctt
ggaatggcatccaggtataatactaaagtatactgcaggcagacactagttggtggccac
tatggtctcctcaacacaaccacactggtccccaatcctgactactacagcgcccttcta
tggcatcgactaatgggaaaaggtgttctagctgttggaagcaatgcttcgccatttcta
cgctcttatgcccattgttcgaaaggaagagcaggtataacgttactgctgatcaattta
agcaatcagactgatttcataatcagtgttcaaaatagcatggacatgagattgaccgtg
gaagaaaacatatctggagaaaactctttcgtgcgtggcctcaagagatcagtttcatgg
gttgggagccgagcatcagatgaaccattgtatagagaggagtaccatttaactgcaaaa
gatgggaaccttcaaagccgaaccatggttcttaatggaatcccgttagagcttacagaa
gatgaaaacattccgagtctggaccctgtccgtcttgatgtgaattctcctttatacatc
aatcctttgtcgatttcgttcatcgtattcccaaacttcgatgctccagcttgtgcatga
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