Populus trichocarpa (black cottonwood): 7453862
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Entry
7453862 CDS
T01077
Name
(RefSeq) pre-mRNA-splicing factor SLU7-A
KO
K12819
pre-mRNA-processing factor SLU7
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7453862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7453862
Spliceosome [BR:
pop03041
]
Complex C
Other components
Step II factors
7453862
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slu7
zf-CCHC_4
TRF
Motif
Other DBs
NCBI-GeneID:
7453862
NCBI-ProteinID:
XP_002322045
UniProt:
B9IE19
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Position
15:4968377..4972826
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AA seq
536 aa
AA seq
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MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKP
SLKHQRKWKSDPNYTKSWYDRGAKVFQAEKYRKGACLNCGAMTHAAKSCVERPRKVGAKW
TNIHIAPDEKIETIELDYDGKRDRWNGYDPSSYSHVVERYEARDAARRKYVKEQQLKKLE
EKNGNQNAEDGVNDVDNDEDDLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRI
REDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYEGDNQYRNSGQALEFKHLNI
HAWEAFDKGQDIHMQAAPSQAELLYKNHKVIKEKLKTRTKDTIMEKYGNAASEEEIPREL
LLGQSERQVEYDRAGRIIKGQETVLPRSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQM
IRNSYCTGAAGIKAAEAATDLMKANIDRKEATKEAPAPVEEKQLATWGTEVPEDLILDEK
LLAEALRKEDERKREEKDERKRKYNVRWNDEVTAEDMEAYRMKKVHHDDPMKDFLH
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgcatcagttgcatttaagtctagagaggaccataggaagcagattgaattg
gaagaagcgcgtaaagctgggcttgcccctgctgaggttgatgaggatggaaaggagatt
aatcctcacattcctcagtatatgtcatctgcaccttggtatctcaatgccgagaaacct
agtttgaaacatcaaaggaagtggaaatcagatcctaattatacaaaatcatggtatgat
agaggtgcaaaagttttccaggctgaaaaatatagaaagggtgcatgcctcaactgtgga
gctatgacacatgctgcaaagtcatgcgtggaaaggcccaggaaagtgggtgcaaaatgg
actaacatacacatagcccctgatgaaaaaatagagactattgaacttgattatgatggc
aagcgagaccggtggaatggttatgacccatcaagctatagccatgttgttgaaagatat
gaagctcgagatgcggctcgaaggaagtatgtgaaggaacaacaacttaaaaaattggag
gagaaaaacgggaaccaaaatgctgaggatggggttaatgatgtggacaatgatgaggat
gatttaagggtagatgaagccaaggttgacgagagcaaacaaatggactttgcaaaggtt
gagaagcgtgtgcgaacaacaggtggtgggagcacaggaactgttaggaatttgcgtatt
cgtgaggacacagcaaaatatcttttaaatcttgatgttaactctgcgcactatgacccc
aaaacccggtccatgcgtgaggatcctcttccagatgcagatccaaacgaaaaattctac
gagggagataaccaatataggaatagtggtcaagcgttggagttcaagcatctcaacatc
catgcttgggaggcatttgataagggacaagatattcacatgcaagcagctccatcgcaa
gccgagttgctatataagaatcataaggtcataaaagagaagttgaagacccgtacaaag
gacactattatggagaagtatggcaatgcggctagtgaagaggaaattccaagagaactt
ctattgggacagagtgaaagacaagttgaatatgatcgggcagggcggattatcaagggg
caggagactgtacttcctagaagcaagtacgaagaagatgttttcattaataatcacaca
accgtgtgggggtcatggtggaaggatcatcaatggggctacaagtgctgcaagcagatg
attcggaacagttattgcacaggtgctgctggaataaaggctgctgaggctgcaactgat
cttatgaaggctaatattgatcgtaaagaggccactaaagaggcacctgcaccagtggag
gagaaacagcttgctacttggggaactgaggttccagaagatttaattttggatgagaag
ttactcgctgaagcgcttagaaaggaagatgaaagaaagagagaggagaaagatgagaga
aagcggaaatacaatgtcaggtggaatgatgaggttactgctgaagatatggaggcatat
aggatgaagaaagtccatcatgacgacccaatgaaggatttcctccattaa
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