Populus trichocarpa (black cottonwood): 7453895
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Entry
7453895 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7453895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7453895
03012 Translation factors [BR:
pop03012
]
7453895
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7453895
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
7453895
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
7453895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
nSTAND3
ATPase
AAA_16
AAA_30
Myosin_head
Motif
Other DBs
NCBI-GeneID:
7453895
NCBI-ProteinID:
XP_002321501
LinkDB
All DBs
Position
15:complement(3944257..3955229)
Genome browser
AA seq
1202 aa
AA seq
DB search
MPCCIRMNTIMSLRPTSTKTAKSLHFHYKAKTTLKPSLFSSSSFVSVRNHQTLSFTNQPL
PRPLRFRHHGIFSFKCFGVAGFHSKKLALPYTRSMQSFNYGRFAYRDVSSDESDYELGSS
QKEMTGSTLDNVDDWKWKLTMLLQSKDQQEVVSREKKDRRDFGHLSAMATRMGLHSRQYS
RIVVFSKVPLPNYRHDLDDKRPQREVILPFGLQREVDAHFKAYISKKPTSRGLFPPNSLS
RSNGGRSMDTDERIYERPELSVQNSVAMERILSRKSLQLRNQQEKWQESPEGQKMIEFRR
SLPAYKEKDVLLKAISENQVIVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPR
RISAMAVSERVAAERGEKLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLLDRNLKGV
THVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLILMSATLNAELFSSYFGDAPAIHIPG
FTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKTWKMQKQAQAFKKRKSQIASSVEDAL
EVADFKGCSSRTRESLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD
QLQAHPILGDPCRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF
VVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQPGECYHLYPRCVYDAFAD
YQLPELLRTPLQSLSLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKLIGALDEHEN
LTVLGRHLSVLPVEPKLGKMLILGTIFNCLDPIMTVVAGLSVRDPFLIPFDKKDLAESAK
AQFAGRDCSDHLALVRAYNGWKDAERQQYGHEYCWKNFLSAQTLKAIDSLRKQFFYLLKD
TGLVDKQIENCNSRSIDEHLMRAVICAGLFPGLCSVVNKEKSITLKTMEDGQVLLYSNSV
NAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNIEKGGLDGHLKMLGGYLE
FFMKPTLGDMYLSLKRELEELIQNKLLDPKLDIQSHNELLMAIRLLVSEDQCEGRFVFGR
QLPAPSKKAEKAKNVAGDGGDNSKNELQTLLARAGHESPAYKTKQLKNNQFRSTVFFNGL
DFAGQPCSSKKLAEKDAAAAALLWLKGETHSYSRNTDHFSVLLKKSKTTNQNRIPVRGGK
WN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgccttgctgtatcagaatgaacacaatcatgtctctaagacccacttccaccaaaaca
gcaaaatctctccatttccattacaaagctaaaaccacccttaaaccctctttattttct
tcatcatcttttgtttccgttagaaaccaccaaaccctatcttttactaaccagccattg
ccccgccctcttcgattcaggcatcatgggattttttcgttcaagtgttttggtgttgca
ggttttcattccaagaaacttgctttgccatataccaggtctatgcagagctttaattat
ggcaggtttgcttaccgggatgtttctagtgatgaatccgattatgaattaggctcctcc
cagaaggaaatgactggctcgacccttgacaacgttgatgattggaaatggaagttaacc
atgcttcttcaaagtaaagatcagcaagaagttgtatccagggagaaaaaggacagacgt
gattttgggcatctatcagctatggcaacccgaatgggtttacacagccgtcaatattca
agaattgttgtgtttagtaaagtccccttgccaaattacagacatgatctggatgataag
cgtccacagagagaggtgatcttaccttttgggttacaaagagaagtagatgctcatttc
aaagcttacatttccaaaaagcccacgagcagaggattatttcctcccaattccttgtca
agatcaaacggtggtaggagtatggacaccgatgaaagaatctatgagcggccagaactg
tcagtacaaaatagtgttgccatggagagaattcttagtcggaagagtttgcagcttcgt
aatcaacaagaaaagtggcaggaatctcctgagggccaaaagatgattgaatttcgtaga
agccttcctgcatataaagaaaaggatgtgctgttaaaagccatatctgaaaatcaggtt
attgttgtctctggtgaaactggttgtggtaaaaccacacaacttcctcaatacatacta
gaatctgagattgaagctgctcgcggagctgcatgtagtattatatgtacacagcctaga
agaatatcggctatggctgtttctgaaagagttgctgcagaacgaggggagaaactggga
gaatcagttggttataaagttcggctcgagggtatgagaggaagggacactcgacttcta
ttctgtacgactggcatattgttgaggagattacttctggacagaaatttaaaaggtgta
actcatgtcatcgttgatgagattcatgaacgcggaatgaatgaagatttccttcttatt
gtactgagagatctgcttcctcgtcgaccggagttgagattgattttgatgagtgcaacc
ttaaatgcggagcttttctcttcctactttggcgatgctcctgcaattcatattcctggt
tttacatatcctgtccgtgcacattttttagagaatattcttgaaataaccgggtatcgg
ctgactccttacaatcaaatcgacgattatggtcaagaaaagacgtggaaaatgcaaaaa
caagctcaagctttcaaaaagaggaagagccagattgcttcttctgttgaggatgccctt
gaagttgctgactttaaggggtgtagttcacgcactcgggagtctttatcttgttggaat
cctgactcaattggttttaacctcattgagcatgttctttgtcacatagttaagaaagag
agacctggtgctgtgttggtttttatgactggttgggatgacattaactctttaaaagat
cagctacaagctcatcctatcttgggtgatccttgcagagtattgttactggcctgccat
ggttccatggccagctctgagcagaggttaatatttgataaacctgaagatggagtgagg
aaaattgtcttagctacgaatatggctgagactagtattactatcaatgatgtggtattt
gtggttgactgtggaaaggcaaaggagacatcgtatgatgctttaaataacactccttgt
ttgcttccatcctggatctcaaaggctgctgcccggcaaagaaagggaagagctggtcgt
gttcaacctggcgagtgttatcatctttatcccagatgtgtttatgatgcatttgctgac
tatcaattaccagaacttttgaggacacctttacagtctttgagtttgcaaatcaaaagt
ctccaacttggaagtatatcagagttcctatcaagggccctgcagccaccagagcctctc
tcggttcaaaatgctgttgagtatttgaagttgattggggctttagatgagcatgaaaat
ctgacagtgctaggacgtcatttgtcagtgcttccagttgagcctaagctcgggaaaatg
ctcatattggggaccattttcaactgcctagatccaataatgactgtcgttgctggtctc
agtgttagagatccattcttaataccatttgacaagaaggatcttgcagagtctgcaaaa
gcacaattcgctggtcgtgattgcagtgaccatcttgcacttgtccgggcctataatggt
tggaaagatgcagaaagacaacaatatggtcatgagtactgttggaagaattttctttct
gcacaaactctaaaagccattgattccttaaggaaacaattcttttatttgctcaaggat
actggactggttgataagcagatagaaaattgcaattcaaggagcattgatgagcatctt
atgcgagcagtcatctgtgctggcctgttccctggattatgctctgttgtgaacaaagag
aagtcgataacactgaaaacaatggaggatggccaggtgcttctgtactcgaattctgtg
aatgctggggtgcccaaaattccatacccttggttagttttcaatgaaaaagtgaaagtg
aattcagtttttctccgtgattcaactggtgtttctgattccgtgctgcttttatttgga
ggaaacattgagaagggtggactagatgggcacctaaaaatgttgggaggatacttggaa
ttttttatgaaacccacattaggagatatgtatttaagcttaaaacgtgagcttgaggaa
ctgattcagaataaacttctagatcccaagttggatatacagtcccacaatgagcttctg
atggcaataagattgctggtttcagaggaccaatgtgagggtagatttgtatttggtcga
cagctgccagcaccctcaaagaaggcagaaaaggccaaaaatgttgctggagatgggggt
gacaattctaagaatgagcttcaaactttacttgccagggcagggcatgaatcacccgct
tataagacaaaacaactgaaaaacaaccagttccgttctactgttttctttaacgggctg
gactttgctgggcagccttgcagcagtaagaaacttgcagaaaaggatgcagctgctgca
gctctactgtggttgaagggggagacacattcgtattccagaaatactgaccacttctcg
gtgcttctgaagaagagcaagaccacaaatcaaaacagaatcccagttcgtggtggtaaa
tggaattag
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