Populus trichocarpa (black cottonwood): 7454000
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Entry
7454000 CDS
T01077
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1
KO
K12236
transcriptional repressor NF-X1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7454000
04121 Ubiquitin system [BR:
pop04121
]
7454000
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
7454000
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
7454000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_NFXL1
zf-NF-X1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
7454000
NCBI-ProteinID:
XP_002317701
LinkDB
All DBs
Position
12:complement(3922075..3926152)
Genome browser
AA seq
1022 aa
AA seq
DB search
MGRGKERGVETREVKDPNLPQLAQEIQEKLLKSTVECMICYDMVRRSAPVWSCSSCFSIF
HLNCIKKWARAPTSVDLIAEKNQGFNWRCPGCQSVQLTSLKDIRYVCFCGKRTDPPSDLY
LTPHSCGEPCGKQLEKEVPGADGSREGLCPHNCVLQCHPGPCPPCKAFAPPSLCPCGKKR
ITTRCADRKSVLTCGQRCDKLLECWRHRCEQICHVGPCNPCQVLINASCFCKKNTEVVLC
GDMAVKGEVKAEDGVFSCNSTCGKVLGCGNHICGETCHPGDCGDCEFMPGRVKSCYCGKT
SLQEERNSCLDPIPTCAQICGKSLPCGMHQCKEVCHSGDCAPCLVSVTQKCRCGSTSRTV
ECYKTTSENEKFLCDKPCGRKKNCGRHRCSERCCPLSNSNNQFSGDWDPHFCQMACGKKL
RCGQHSCESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCG
HPASHSCHFGDCPPCSVPVAKECVGGHVILGNIPCGSRDIRCNKLCGKTRQCGLHACGRT
CHSPPCDTSPGTETGSRASCGQTCGAPRRDCRHTCTALCHPYAPCPDVRCEFPVTITCSC
GRMTASVPCDAGGSNGGYNDTILEASILHKLPAPLQPVESSGKKIPLGQRKFMCDDECAK
FERKRVLADAFDINPPNLEALHFGENSSVTELIGDLYRRDPKWVLAVEERCKYLVLSKSR
GTTSGLKIHVFCPMLKDKRDAVRLIAERWKVAIYSAGWEPKRFIVIHATPKSKTPSRVIG
IKGTTTLSASHPPVFDALVDMDPRLVVSFLDLPREADISSLVLRFGGECELVWLNDKNAL
AVFNDPARAATAMRRLDHGSVYYGAAVVPQNSGASMGSPATNAWGTAGTAKEGTITALKG
TSWKKAVVQESGWREDSWGDEEWSGGGSADVQASAWKGKEHPISTSINRWSVLDSDKADS
SSAASVRIEDPAKRVAEILSSSGLESNVSTSNISVQTAMQPGGVSSEEDLSEVVDDWEKA
YD
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgggggaaggagaggggggtggagactcgggaagtgaaggacccgaatttgccg
caacttgcgcaagaaattcaggagaagcttttgaagagtacggttgagtgtatgatttgt
tatgatatggttcggaggtctgcgcctgtttggtcttgttcgagttgtttctcgattttt
cacttgaattgtatcaagaaatgggctcgtgcgccgacgtctgttgatttgattgcggag
aagaatcaaggttttaattggcggtgtccgggatgtcaatctgtgcagcttacgtcgttg
aaggatattcggtatgtttgcttttgtgggaagaggacggatccgccttcggatttgtat
ttgaccccgcattcatgtggggaaccgtgtggaaaacagcttgagaaggaggttcctggt
gctgatgggagtagggagggtctttgtccgcacaattgtgtcttgcagtgtcaccctggg
ccatgtcctccttgtaaggcctttgctccaccaagtctgtgtccttgtgggaagaaaaga
atcacaacaagatgtgctgatcggaagtccgttcttacctgtgggcaacgatgtgataag
cttctggaatgttggcgtcatcgatgtgagcagatttgccatgttggtccctgcaatcct
tgtcaggtattgattaatgcttcatgtttctgcaagaagaacacggaggttgttctatgt
ggggatatggcagtgaagggagaagtgaaagctgaagatggtgttttttcttgcaactca
acatgtggaaaggttctgggttgtggaaatcatatttgtggtgaaacttgtcatccaggt
gattgcggggattgtgagtttatgcctggcagggtcaagtcatgctattgtggaaaaaca
agtttgcaggaggaaagaaatagttgtttggatccaattccaacgtgtgcacaaatatgt
ggcaaatcccttccttgcgggatgcaccaatgtaaagaggtgtgccattcaggggattgt
gctccttgtttggtttctgtcacccaaaaatgccgctgcggatcaacctcccgaactgtg
gagtgttacaaaactacttcagagaatgaaaaattcctgtgtgacaagccttgtggtcga
aagaagaactgtggaaggcataggtgcagcgagcgatgctgccctctttccaactctaac
aatcagttctctggggattgggatccacatttttgtcaaatggcttgtgggaagaagtta
aggtgtggacaacactcttgtgaatcactgtgtcacagtggccattgtcctccttgtctt
gaaacaattttcactgatttgacatgtgcatgtgggagaacttccatccctcctccattg
ccgtgcggcacgcctcccccttcatgtcagctcccatgctcagttcctcagccatgtggc
catccagcttctcatagctgccacttcggagactgcccaccttgttcggtgcctgtagct
aaagagtgtgttggtgggcatgtgattctggggaacataccctgcgggtcaagggatatc
agatgcaacaaactctgtgggaagaccaggcaatgtggtttgcatgcatgtggaagaact
tgtcattcaccgccttgtgatacctctcctggaactgaaactggctcaagagcttcttgt
gggcagacatgcggtgcccctaggagagattgccggcatacttgcactgcactttgtcat
ccttatgctccttgtcctgatgtcagatgtgagttccctgtcacaattacttgctcttgc
ggcaggatgacagcatctgttccttgtgatgctggagggagcaatggtggttataatgat
actattttagaagcatccattctccacaagttgccagcgcctcttcaaccagtggaatca
tctggaaagaagattcctcttggccagagaaagtttatgtgtgatgatgaatgtgccaag
tttgagcggaaaagggttcttgcagatgcttttgatatcaaccctccaaatttggaagct
cttcattttggtgagaattcttccgtgacagagttgattggtgatctgtacaggcgcgat
ccaaaatgggtgcttgctgtggaggagaggtgcaaatatttggttcttagcaagagcaga
ggaaccacaagtggtcttaagattcatgttttctgcccaatgctgaaggataaaagagat
gcagttaggctaattgctgagaggtggaaggttgcaatttattctgctggttgggagcca
aagcgttttattgtaatccatgctacaccaaaatccaaaaccccatctcgtgtgattggc
attaagggtacgacaactttaagtgcctcccatccaccagtttttgatgctctcgtagac
atggatcccaggcttgttgtttcttttctagatttgccgagggaggcggatataagctca
ctggtccttaggtttggtggggaatgcgaactagtttggttgaatgataagaatgccctg
gctgtattcaatgatcctgctcgagcagcaaccgctatgaggaggttggatcatggatca
gtatattatggagctgcggtggttcctcaaaatagcggtgcatccatgggatcaccagct
accaatgcctggggaacggcaggcactgcaaaggaagggacgatcacagctctgaaggga
acttcgtggaagaaagctgtagtgcaggagtctggttggagggaagattcatggggtgat
gaagagtggtctggtggtggttctgcagatgttcaggcttctgcatggaaagggaaagaa
catccaatctccacttcaattaaccgatggagtgtactggactccgataaggctgacagt
tcatctgctgcctctgtcaggatcgaggatcctgcaaaacgagttgcagaaattctttcc
agttcaggtttggaatcaaatgtaagcacttcgaatatatcagtgcaaactgcgatgcaa
cctggaggggtttcaagtgaagaagatttatctgaggtggtggatgactgggagaaggcc
tatgattga
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