Populus trichocarpa (black cottonwood): 7454021
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Entry
7454021 CDS
T01077
Name
(RefSeq) eukaryotic translation initiation factor 5B isoform X1
KO
K03243
translation initiation factor 5B
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pop03012
]
7454021
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
eIF-5
7454021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
IF-2
GTP_EFTU_D4
GTP_EFTU_D2
MMR_HSR1
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
7454021
NCBI-ProteinID:
XP_024438439
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All DBs
Position
12:3488355..3497455
Genome browser
AA seq
1370 aa
AA seq
DB search
MGRKKPAARDEENAPAGGGGKSKKKGLMIDDDEYSVGTELSEETQVQEEKVVITGKKKGK
KGNQKDFKEEKGDGEEEEVPEVVFAGKKKSKGKKSGAGGNAGFSSSNFALLGGDEDDDGN
DDDDERSELTGEKDSEEEDEPVASFKGKTKGKGDKGSDGGSLFSASAFDAIDDGEIDGEV
VDKEEDDDDNDVPVIEFTGKKKKSAKGGKKDAGSVFLAASFDGLDENEDDEKKDEDEDFG
AITFSGKKKKSSKSSKKSGSNKFSAALLDDENDEETSVSESVKTNDDVIGVEDEDESVVA
FTGKKKKSSKKKGASNHVFSALGGEDEREVAEMVEPEEPNIVEANDSKVTKSEAVAETSK
NKKKKKGKSGRTAQEEDDLDKILAELGGGASTLKPSESPPQEEKLNVQPEPVAVPDALVE
KEGEEEKEESAAAKKKKKKKEKEKEKKVAAAAAAAAKEEKLEEAKAETSEPKKTDAKGKA
AEKKLPKHVREMQEALARRKEMEERKAKEEEEKRRKEEEERLRQEELERQAEEARRRKKE
REKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILANAGITVPTADRDNAPTKRPRYQTK
KSKPAHHQANGIKIEEHVEAKGKEQEEQEEVHEVETVELEKAEPVEEEKTEVASVPEENG
MEEDDDDEEWDAKSWDDVNLNVKGAFDDEEDSEPEPVLKKETKSSVPASRGAAPPSDAKP
AIAVRKPVTSQPMDSRDVENKKIQTEVEVSDKNRKKDAAVKNKGAVSDAIPKQGEENLRS
PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKL
NVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLRMRNTEFIV
ALNKVDRLYAWKAQRNAPIRKALKQQSKDVQNEFDRRLMEVITQFKEQGLNTELYYKNKD
MGETFNIVPTSAISGEGIPDLLLLLIQWSQKTMIEKLTFRNEVQCTVLEVKVIEGHGTTI
DVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKI
TGQGLEHAIAGTGLYVVGRDDDVEDVKESAMEDMKSVMSRIDKTGEGVYVQASTLGSLEA
LLEFLKSPAVSIPVSGIGIGPVHKKDVMKSSVMLEKKKEYATILAFDVKVTPEARELADE
LGVKIFIADIIYHLFDQFKAYIQNLKEEKKREAADEAVFPCVLEIIPECIFNKKDPIILG
VDVLEGILKVGTPLCVPQKEYIDIGRIASIEFNKKSVDYAKKGQKVAIKIVGTNAEEQQK
MHGRHFDNEDQLVSHITRRSIDILKVNYRDDLSIEDWRLVVKLKTLFKIQ
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaaagaagccagccgcgcgtgatgaggagaacgctcctgcgggtggtggaggg
aagtcgaagaagaaggggttgatgattgatgatgatgagtattcggttgggaccgagttg
tccgaggagacacaggttcaggaggagaaagttgtgattactgggaaaaagaagggtaag
aaggggaatcagaaggattttaaggaagagaagggggatggtgaggaggaggaagtgccg
gaggttgtgtttgctgggaaaaagaagtcgaaagggaagaagagtggtgctggtgggaat
gctggtttttcatcgtccaattttgccttattgggaggtgatgaggatgatgatggtaat
gatgatgacgatgagagatcggaattgactggcgagaaagatagcgaggaggaggatgag
cctgtggcaagttttaaagggaagacaaagggtaagggggataaggggagtgatggtggt
agtttgtttagtgcatcggcttttgatgctattgacgatggtgagattgatggagaggta
gtggataaagaagaggatgatgatgacaatgacgtgcctgttattgaatttacaggaaag
aagaagaagtcggcaaagggtggtaagaaggatgctgggagtgtgtttttggcagcgagt
ttcgatgggttagatgagaatgaggatgacgagaagaaagatgaggatgaggattttggt
gcgattactttctctggtaagaagaagaagtcttccaagtctagcaaaaagagtggtagt
aataaatttagtgcggcattgcttgatgatgagaatgatgaagagacttctgtgtctgaa
tcagtgaaaaccaatgatgatgtgattggcgttgaggatgaagatgagtcggtggttgca
tttactggtaagaagaagaagtcttctaagaagaagggggctagtaatcatgttttttct
gcattgggtggagaggatgagagagaagttgctgagatggttgaaccagaagaacctaat
attgtcgaagctaatgatagtaaggttactaagagtgaagcggtggcagagacttcaaag
aataagaagaagaagaagggtaagagtggaaggactgctcaagaagaggatgatttggat
aagattcttgcggagctaggtgggggggcatctactttgaaaccttctgaatcacctcca
caagaggagaaacttaatgttcagcctgaaccagttgcagtgccagatgctctggtcgag
aaggagggtgaagaagaaaaagaagagtctgctgctgcaaagaagaagaagaagaagaaa
gagaaggagaaagagaagaaggtagctgctgccgctgctgcagcggcaaaggaagaaaag
ctggaagaagcaaaagctgaaacaagtgagccaaaaaagacagatgcaaagggtaaagct
gctgaaaagaagcttcctaagcatgttagagagatgcaagaggcacttgctaggagaaaa
gaaatggaggagagaaaagcaaaggaggaagaggagaagaggaggaaggaagaagaggaa
agactaaggcaagaagaacttgagaggcaagcagaagaggctaggcgtaggaagaaggaa
agggaaaaggagaaactcttgaagaagaaacaggaaggcaagcttctaacagggaagcag
aaggaagaacaacggcggctagaggctatgcggaatcaaatacttgctaatgcaggcatc
actgtccctactgcagacagagataatgcacctacaaaacggcccaggtaccagactaag
aagtcaaaaccagctcaccatcaagcaaatggtatcaagatagaggaacatgtagaagct
aaaggaaaagagcaagaggagcaggaagaagtgcatgaggtggaaaccgtagaattagag
aaggctgaaccagtggaggaagagaaaacagaagttgctagtgtacctgaggagaatgga
atggaggaagatgacgatgatgaggaatgggatgcaaagagctgggatgatgtaaatctt
aatgttaagggtgcatttgatgatgaggaggattctgagcctgaacctgtcttgaagaag
gaaacaaagagttctgttccagcttctcgcggtgcagcccctccttcagatgccaagcct
gcaattgcagtcagaaaacctgttacatcacagccaatggattctcgtgatgttgaaaat
aagaaaattcagactgaggttgaagtttctgacaaaaacaggaagaaagacgctgctgtg
aaaaataaaggagcagtttcagatgccatccctaaacagggtgaagagaacctgcgctct
ccaatttgctgtattatgggccatgttgatactggtaaaaccaagctgttggattgtatt
cgaggcaccaatgtgcaagaaggtgaggctgggggtatcacgcaacagattggtgcaaca
tactttcctgctgagaacatacgggaaagaacaaaggaattgaaagctgatgcaaaacta
aatgtccctggtctgttggttattgatacccctggccatgaatcttttactaatctacgg
tcacgcggttcaggtttatgtgacattgctattctggttgttgacataatgcatggcttg
gagccgcaaaccatagaatcactcaatcttttgaggatgaggaatacagaatttattgtt
gcattaaataaggtggacagactctatgcatggaaagcacaacgtaatgcacctattaga
aaggcattgaagcagcaatcaaaagatgtgcaaaatgaatttgacaggaggctcatggag
gtcataactcagttcaaggagcaaggattaaatactgaattgtactataaaaacaaggac
atgggagaaacttttaatatcgtaccgacaagtgcaattagtggagaaggcattcctgat
ttgttactgctactgatccaatggtctcagaaaactatgattgagaaactcacattcaga
aatgaagtgcagtgtacggtattggaggttaaggttattgaaggccatggaacaacaatt
gatgttgtgttggttaatggtgtgctccatgaaggcgatcaaatcgtggtgtgcggctta
cagggtcccattgttaccacaattcgggctttgctgacaccccacccgatgaaggaactc
cgagttaaggggacatatcttcaccataaagaaatcaaggctgcacagggtatcaagatc
actgggcagggccttgaacatgctattgctggaactggtttatatgtggttgggcgtgat
gatgatgtggaagatgtcaaggaatccgcaatggaagacatgaagtcagtaatgagtcgg
attgataaaactggcgagggagtttacgtacaagcatctacccttgggtcactggaagca
ttgctggagttcttgaagtcaccggcagtaagcattcctgttagcggtataggcattggc
ccagtacataaaaaggatgtcatgaagtccagtgtaatgcttgagaagaaaaaggagtat
gccaccattttggcatttgatgttaaagtgacacctgaggctcgggaacttgcagatgaa
ctaggagtaaagattttcatcgctgatatcatttatcacctatttgatcaattcaaggct
tacattcagaatctgaaggaggaaaagaagagggaagccgctgatgaagctgttttccca
tgtgttcttgagataataccagagtgcattttcaacaagaaagatcctatcatcttgggg
gttgatgttcttgagggcatactcaaggttgggacaccactttgtgttccacaaaaagaa
tacattgacattggccgaattgcttccattgagttcaacaaaaaatcagtggattatgca
aagaaaggccagaaggtggccattaagattgtgggaaccaatgcggaggagcagcaaaaa
atgcatggcaggcattttgacaacgaagatcaactagtcagccacattacaagaaggtca
attgatattcttaaagttaattaccgggatgatctgtcaattgaagattggaggctggtt
gttaaattgaagaccctttttaagatacagtaa
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