Populus trichocarpa (black cottonwood): 7454037
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Entry
7454037 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase RING1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7454037
04121 Ubiquitin system [BR:
pop04121
]
7454037
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7454037
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
7454037
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7454037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
zf-RING_16
zf-Nse
zf-RING-like
zf-RING_Vps41
Anti-TRAP
zf-P11
Motif
Other DBs
NCBI-GeneID:
7454037
NCBI-ProteinID:
XP_024438338
LinkDB
All DBs
Position
12:complement(3299926..3303171)
Genome browser
AA seq
348 aa
AA seq
DB search
MSSTGGVGVPQLYFCYQCDRTVTITPSPTSDLSCPNCQEGFLEECESPNPSSNPVDSGLG
PAILLDEFASIFGGMAPTPRSSNNSTTTNSSSASPLFQDPDGFNPFAFLQNYLQTMRAGG
ANIQFVIENNSGMGGMDTTGFRLPANLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSA
VENLPDIKVTKELLESDSSQCAVCKDSFELGEEAKQIPCKHIYHKDCITPWLELHNSCPV
CRYELPTDDPDYEQRKGNGNDGGYQNAGGGNSGGGSFSDGDNSDGNAQTPRDRRFRIAFQ
WPFSSGSGSGRSVGSSAGASNSGSGNNNDEDSRGNTNFGSETREEDLD
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaccggcggcgtcggcgtcccgcaactctacttctgttaccagtgcgaccga
accgtaacaataactccgtcaccaacctccgatctctcatgtcctaactgtcaggaaggt
ttcctcgaagaatgtgaatctccaaaccctagctctaaccctgtcgattctggtctcggc
cccgccatcttactcgacgaattcgcctccatcttcggtggcatggcccccactcctcga
tcatcaaacaactcaacaacaacaaactcttcttccgcgtcgccgctttttcaagatccc
gacggcttcaatcctttcgcgttccttcaaaattacctccaaaccatgagagccggcgga
gcaaacattcagtttgtgattgaaaataattctggtatgggtggaatggacaccacagga
tttcgtcttccggcgaatctcggagattattttatcggaccagggttagagcaactgatc
caacagcttgcggagaatgatcctaataggtatggaactccgccggcatcaaagtctgcg
gtggagaatctccctgatattaaggtaacgaaggaattattggagtcggattcttcacag
tgtgcggtttgtaaggatagttttgagctaggggaggaagcgaaacaaatcccttgtaag
catatctatcataaggattgtattacaccttggcttgaattgcataattcgtgtccggtt
tgtcggtatgagttgcctactgatgatcctgattatgagcagaggaaagggaatgggaat
gatggtggttatcagaatgcgggtggtgggaatagtggtggtgggtcttttagtgatggt
gataatagtgatggtaacgcacagactccaagagacaggaggtttaggattgcttttcag
tggccttttagtagtggtagtggtagtggtaggtcggttggatcatcagcgggggctagc
aatagtgggagtgggaacaacaatgatgaggattcgagagggaataccaactttggatcc
gagactagagaagaggatcttgattga
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