Populus trichocarpa (black cottonwood): 7454302
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Entry
7454302 CDS
T01077
Name
(RefSeq) transcription elongation factor SPT4 homolog 2 isoform X1
KO
K15171
transcription elongation factor SPT4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
7454302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7454302
03019 Messenger RNA biogenesis [BR:
pop03019
]
7454302
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
7454302
RNA polymerase I system
7454302
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
7454302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt4
VWC2L_2nd
HIPIP
Motif
Other DBs
NCBI-GeneID:
7454302
NCBI-ProteinID:
XP_002310913
UniProt:
B9HK06
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All DBs
Position
8:59716..64652
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AA seq
116 aa
AA seq
DB search
MGSAAAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCSFFKMDEDHERVVDCTTPNFT
GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVPYIPPKRV
NT seq
351 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtgcagccgcgcaaattccgacgagctttggacatgagctcagagcctgtctt
cgttgccgccttgtcaaaacttatgatcagttcagagagtcgggatgcgagaattgttcc
ttttttaagatggacgaggatcatgagcgtgtagttgattgcacaactcctaactttact
gggattatttctgtcatggatccgagtagaagctgggctgctcgctggttgagaatcgga
agatttgtacctggttgttacacacttgctgtttcagaggcacttccagaggacttacag
aatttatgtgaagatgagcgtgtgccctacattcctcccaaacgtgtataa
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