Populus trichocarpa (black cottonwood): 7454347
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Entry
7454347 CDS
T01077
Name
(RefSeq) structural maintenance of chromosomes protein 1
KO
K06636
structural maintenance of chromosome 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7454347
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
7454347
Meiosis-specific proteins
Cohesin complex and associated proteins
7454347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_29
AAA_23
ABC_tran
ATG16
SbcC_Walker_B
DUF1664
Motif
Other DBs
NCBI-GeneID:
7454347
NCBI-ProteinID:
XP_052309109
LinkDB
All DBs
Position
5:complement(22557745..22571599)
Genome browser
AA seq
1217 aa
AA seq
DB search
MPSMSSPGKILKLEMENFKSYKGLQTIGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRTG
HLRGAQLKDLIYAYDDREKEQKGRRAFVRLVYLLPDGSELQFTRAITSSGGSEYRIDGRV
VNWDEYNARLKELGILVKARNFLVFQGDVESIASKNPKELTALFEQISGSEDLKREYEDL
EEKKARAEEKSALVYQKKRTVVMERKQKKEQKEEAEKHLRLQDQLKSLKKEHFLWQLYTI
HNDSIKMNAELDAEKRNQEDLMQELEKFGHEADKKKKEQEKYQKEITQCERKIKERSLKL
DKHQPELLKLNEEMSRINSKIKSSRKELERKMVERRKHADEIKELESGIQDLSSKMDGLR
EKSRDVGGKLPLADGQLQEYFQIKEDAGMKTVRLRDEKEVLDRQQHADMEAQKNLEENLQ
QLENRAHELDSQDKQMRERMKKILDASTKHKNEVIDLKKELREMQDKHRDSRHKYENLKS
KIGEIENQLRESRADRHENERDAKLFQAVETLKRLFQGVHGRMIDLCRPTQKKYNLAVTV
AMGKFMDAVVVEDENTGKECIKYLKDQRLPPQTFIPLQSVRVKPVIERLRTLGGTAKLVF
DVIQFDPVLEKAILFAVGNTLVCDELDEAKVLSWTGERFRVVTVDGILLTKSGTMTGGTS
GGMEAKSKQWDDKKIEGLKRKKEQLESELEELGSIREMHLKESEASGKMSGLEKKIQYAE
IEKKSIEDKLANMKKEKRVIKEEIDRINPELRKLKETVEKRATEIRKLEKRINDIVDRIY
RKFSEDVGVENIREYEENHVKAAQHMAEERLSLSNQLAKLKYQLEYEQKRDMESRIRKLE
SSLAALENDLKQVQKKEAQIKLASDKATDEINKWKEEMKEWKSKSEECANEIREWTKKGS
AVTSNLSKLTRLINSKETQIAQLSSWKQDIVEKCELENINLPTVSDPMDIDSPIPGPDYD
FSQLNRSLQDRRPSVREKIEADFKQKIDALISEIEKTAPNLKALDQYEALRERERVVTEE
FEAARKEEKQIADSYNGVKQRRYELFMGAFNHISNSIDKIYKQLTKSSNHPLGGMAYLSL
ENEDDPFLHGIKYTAMPPQKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDA
ALDNLNVAKVAGFIRARSCEGTRGIVDADGGSGFQSIVISLKDSFYDKAEALVGVYRDSE
RSCSRTLTFDLSVYRPS
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgccttccatgtcttctccaggcaaaatcctgaaattggagatggaaaacttcaaatcc
tacaaaggtcttcaaacaattggtccattcaaggatttcacagccataatcggcccaaac
ggagctggaaaatctaatttaatggacgctatcagtttcgttctcggtgtccgtactggt
catctccgtggagcgcagctgaaagaccttatttacgcgtacgacgaccgtgaaaaggag
caaaaaggacggagagccttcgtgcgcttggtttacctgttgcctgacgggtcggagctc
caattcacccgggctattactagctctggtggcagtgagtaccgtattgatggcagggtt
gttaattgggatgaatacaatgccaggttaaaagagttgggcattcttgttaaggccagg
aattttttggtgtttcagggcgacgtggagtccattgcatctaaaaacccaaaagagctg
accgcactttttgagcagatatctggatctgaagatctcaagagagaatatgaagatctt
gaagaaaagaaagccagggctgaagaaaaatcagctcttgtttatcagaaaaagagaaca
gtagttatggagaggaagcaaaagaaagagcagaaggaagaagcggaaaagcatctacgt
ttgcaagatcaattgaaatctttgaagaaagaacactttctatggcaattgtataccata
cacaatgactcaattaagatgaatgctgaacttgatgctgaaaagaggaatcaagaagat
ctcatgcaagagcttgagaagtttggacatgaagcagacaagaagaagaaggaacaagaa
aaataccagaaagagattacgcaatgtgaaaggaagatcaaagagagaagtttaaaactt
gacaagcatcaaccagaacttcttaaattaaatgaggaaatgtcacgcataaattcaaaa
attaagagcagtcgtaaagagcttgagaggaaaatggtagaaaggaggaagcatgctgat
gagataaaagagctggagagtggcattcaagatctgagttctaaaatggatggtcttcgt
gaaaaaagtcgagatgttggtggaaaacttcccttggctgacggtcaactacaagaatac
ttccaaattaaggaggacgctggcatgaaaactgtcaggctaagggatgaaaaggaggtt
ctggacaggcagcaacatgctgatatggaagctcaaaagaatttggaagaaaacctccaa
cagttggaaaatcgggcacatgaactggattcccaggacaaacaaatgcgtgaaagaatg
aaaaagattcttgatgcttctacaaagcataaaaatgaggtgattgatctgaaaaaggaa
ttgcgtgagatgcaagataaacatcgggattccaggcacaaatatgagaacttgaagtcc
aaaattggtgaaatagaaaaccagctacgtgaatcgagagcagatagacatgagaatgag
agggatgctaagctgtttcaagcagttgagactctcaaacgcctatttcaaggagttcat
ggccggatgattgatctctgcaggccaacccagaagaagtacaaccttgctgttactgtt
gctatggggaagttcatggatgcagttgtggttgaggatgaaaacacggggaaagagtgc
atcaagtatttgaaagaccaaaggcttcctcctcagacatttatacctcttcaatcagtt
cgtgtaaagccagtaattgaaaggttgcgtaccttaggtggtactgcaaagctggtcttt
gatgtgatccaatttgatcctgtcctggagaaggcaattctttttgctgttggaaatact
ctagtgtgtgatgaacttgatgaagccaaggttcttagctggactggggagagatttaga
gttgtaacagtagatgggatcctgctcacaaagtctggcacaatgactggtggcaccagt
ggtggaatggaagcaaagtcaaaacagtgggatgataaaaagattgaaggcctgaaaagg
aagaaagaacaacttgagtctgagttggaggagcttgggtcaatcagggagatgcattta
aaggagtctgaagcatcaggaaaaatgagtgggcttgaaaagaagattcagtatgcagag
attgagaagaaaagtatcgaggacaaacttgcaaacatgaaaaaggagaagcgggttatt
aaagaagaaattgaccgtataaaccctgaacttcgtaagttaaaagaaactgtcgaaaag
agggccactgaaattaggaagctggagaagagaatcaatgacattgttgaccgaatatat
agaaaatttagtgaggatgttggggtggaaaatattcgtgaatatgaagaaaaccatgtt
aaggctgcacaacacatggctgaagaaaggttaagcttgagtaaccagctagcaaagctg
aagtaccagttggagtacgagcaaaaacgggacatggaatcacgaattagaaaactagaa
tcttctctcgctgctttagaaaatgatttgaaacaagttcagaaaaaagaggcccaaatt
aaattagcatctgataaagctactgatgagattaataaatggaaggaagaaatgaaagag
tggaaatccaagtcagaagagtgcgcaaatgagatacgtgaatggacgaagaagggttct
gcagttacaagcaacttatctaagcttacccgtcttataaactcaaaggagacacagatt
gcacagctatcttcctggaagcaggatatagtggagaagtgtgaattagaaaatataaac
cttcccactgtttctgacccaatggacattgactcgccaattcctgggccggattatgat
tttagtcagctaaatagatctcttcaggataggagaccttctgtcagagagaagattgag
gcagattttaagcaaaagatagatgccttgatatcagaaattgaaaaaaccgcaccaaac
ttgaaggcactggatcaatatgaggctctgagagagagagagagggtagtcactgaagag
tttgaagcagccagaaaggaggagaagcaaatagctgattcttacaatggagttaagcag
agaaggtacgagttgtttatgggagctttcaaccacatatcaaatagtattgataagatt
tacaaacaattgacaaagagcagcaatcatccattgggcggaatggcatatttgagctta
gaaaacgaggatgatccttttctacacggtatcaaatacactgctatgccaccacaaaag
cgttttcgagatatggaacagctctctggtggggagaagactgttgcagcgctggcatta
ctcttttccatccacagctacaagccttcaccatttttcatactggatgaagtcgatgct
gcattggataatttaaatgttgcaaaggtagctggattcattcgagcaagatcatgtgaa
ggaaccaggggtattgtggatgctgatggtggcagtggttttcagagtatcgtgatctct
ctgaaggatagcttttatgacaaggccgaagcattggtcggggtttacagggactctgag
aggagttgctcaagaactctgacgtttgacctgtcagtatatcgaccatcttga
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