Populus trichocarpa (black cottonwood): 7454452
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Entry
7454452 CDS
T01077
Name
(RefSeq) E3 SUMO-protein ligase MMS21
KO
K22756
E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7454452
03400 DNA repair and recombination proteins [BR:
pop03400
]
7454452
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
7454452
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
7454452
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GFIT
Motif
Pfam:
zf-Nse
zf-RING_UBOX
zf-MIZ
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
7454452
NCBI-ProteinID:
XP_002317010
UniProt:
A0A3N7H9E7
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Position
11:17158665..17160983
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AA seq
290 aa
AA seq
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MRTTALCSSNLLSLLISPSKKHTARPLTNRILYMASTSAPRGGGDVPSASGIMTTSASML
CSENQSLIVEMRKVFNMMKEIAVDLERENESAKVNELENTVAELLATYEDCTYQTSAIES
VGNTYQPGAELTDFKKLLNDEFMKFKGNKSSAPQNHPLLRQFREAVWNVHHSGQPMPGEE
HEDIVMTSTQSTILNITCPLSGKPITELAEPVRGVDCKHVYEKKAIMGYISLNAQAKCPV
TGCPRYLRQDKVVSDPLLLVEIEEMRSMSKENMTATLVEDFTMTDDEEED
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccacagcactttgctcttctaatctcctttccctccttatttctccctccaaa
aaacacactgcccggccactaacgaatcggatcctatacatggcatcaacctccgctcct
cgcggcggcggcgatgttccttccgcctccggaataatgacaacctctgcttcgatgctc
tgctcggagaaccaatctctcatcgttgaaatgaggaaggttttcaatatgatgaaggag
atcgcagttgatcttgagagagagaacgagtctgcaaaagtgaatgaacttgaaaacact
gttgctgagttgttagcgacttatgaagattgtacgtatcagacttctgcaattgaatct
gttggtaacacataccagcctggggcagaactaaccgatttcaaaaagttgcttaacgat
gagtttatgaagtttaagggtaataaatcctcagccccacagaatcatccactactgcgt
caatttcgagaagctgtctggaatgttcatcattcaggacaaccaatgccgggtgaagag
cacgaggacattgtaatgacaagtacccagtccaccattttgaatatcacttgcccattg
agtggaaagccaattactgaactagcagaaccagttcgcggtgtggattgcaagcatgtg
tatgaaaagaaagcaatcatgggctacatatccctaaatgcacaagccaaatgccccgta
acaggctgtcccaggtatttgcggcaagataaagtggtctctgatccgctattacttgtt
gaaattgaggaaatgcgctcaatgagcaaagaaaatatgactgctactctggtagaagat
ttcacaatgacagacgatgaagaggaggattga
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