Populus trichocarpa (black cottonwood): 7454503
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Entry
7454503 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein RUP2
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
pop04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7454503
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
7454503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7454503
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7454503
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7454503
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
7454503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_like
WD40_RFWD3
YNR034W-A-like
ARM_LIN_C
Motif
Other DBs
NCBI-GeneID:
7454503
NCBI-ProteinID:
XP_024441716
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All DBs
Position
15:14869980..14871273
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AA seq
395 aa
AA seq
DB search
MKNFSSKFHPYSHQHTQESQNQETRKQKETIEEEEEERARCEWDFSLSTIVSSSNNNNTA
SISDALGVIEFDQTNSIIATGGVLARKIRIYSLESLLPHESTSQDVHDTIFLDHARARDY
YICTPAKLSSFRWKPRSDGRVLGSGDYDGVVMEYNLERRIPIFERDEHGGRRVWSVDYSH
CDPTMGASGSDDGTMQMWDTRSESGECVATVQPSVRRSAVCCVEFNPFGGPIVAIGCADR
KVYGYDLRMMADPVFVLDGHRKTVTYIKFLDNATLVSASIDGCLKLWNSDNSNVIRTYHG
HVNNRNFVGLSVWRNGGLLGCGSENNKVFVYDKRWSEPVWVHESSSPIMGKDRRGSGFVS
SVCWRQVGEDQCTLVTGGSDGILQVFRGKRKTRTG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacttctccagtaaattccatccttatagtcatcagcacacacaagaatctcaa
aaccaagaaacaagaaaacaaaaggaaaccatagaggaggaggaggaagaaagagcaagg
tgtgaatgggatttcagtctctccacaatagtttcatcaagcaacaataacaacactgca
tccatatcagatgctttaggggtgatcgaattcgaccagacgaatagcatcatcgccaca
ggtggagtactagcaagaaagataaggatttatagtctcgagtctttgttaccacatgaa
agtactagccaagacgtgcatgatactatttttttagaccatgccagggctcgtgactat
tatatttgtaccccagctaagcttagtagtttccgatggaaacccaggtcagacggtcgg
gttctagggtccggagactacgacggggtggtgatggaatataatcttgagaggagaata
ccaatctttgaacgcgatgaacatggcgggcgaagggtttggagcgtggactattcacat
tgcgatccgactatgggtgcatccgggtcggatgatggaaccatgcaaatgtgggacaca
cgcagtgagagtggggaatgtgtggctacggttcaacctagcgtgagacgcagtgccgtc
tgttgcgtggagtttaatccatttggtggaccaatagtagccatcggatgtgctgaccgc
aaggtatacgggtatgatcttcgaatgatggctgacccagtatttgttcttgatgggcat
aggaagaccgtgacatacatcaaatttcttgataatgctacattagtatctgcaagcatt
gatggatgcttgaaactatggaattcggacaattcgaacgtaattcggacctaccacggg
cacgtcaacaatcggaactttgttggattatcagtgtggaggaatggaggcttgctaggg
tgtggatcagaaaacaataaggtttttgtgtatgacaagagatggagtgaaccagtatgg
gttcacgagtctagtagcccaataatgggtaaagataggcgtggcagtgggtttgttagt
agtgtgtgctggaggcaagtgggggaagaccaatgcacacttgtaacaggaggatcagat
gggatcttgcaagtttttcgaggcaaaaggaagacacggactggataa
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