Populus trichocarpa (black cottonwood): 7454548
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Entry
7454548 CDS
T01077
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7454548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7454548
03036 Chromosome and associated proteins [BR:
pop03036
]
7454548
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
7454548
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
7454548
PBAF complex
7454548
GBAF(ncBAF) complex
7454548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
7454548
NCBI-ProteinID:
XP_002318127
UniProt:
B9I3Q3
LinkDB
All DBs
Position
12:12063964..12066585
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AA seq
536 aa
AA seq
DB search
MNNNSSNPGRSIGVPPSFVNSVAKAQSMHVNHQAPQLLSQSQPQTQVGHPGHFQLSEPQA
QVLGHAQYAQAAHAHFQSQIQLANQSIAQLQNVNSGNVGVQSPPVATPSITSAKKSSHKP
PSRPSGGSSNANMASLFKTMELTPAAHRKKRKLHEKEIPEKVAALLPESALYTQLLEFEA
RADAAMARKKMDIQESLKNPPRVRKTLRVYVFNTFENQVQGANERKNAEPPSWSLKIIGR
ILEDGKDPVLTGMIQKSYPKFSSYFKKITIYLDQSLYPDNHVILWESTRSPVLHEGFEVK
RKGNKEFTARIRLEMNYVPEKFKLSPALSEVLGIEIETRPRILAAIWHYVKSRKLQNPND
PSFFTCDPLLQKLFGEEKMKFSLVSQKISLHLTPPQPIHLEHKIKLSGNFPAGTTCYDFI
VDVPSPLQKDLAAYLTSTESNKEIDACDELISNSILKIHEHRRRRAFFLGFSQSPAEFIN
ALIASQSKDLKLVAGDASRNAEKEQRSGFYNQPWVEDAVIRYLNRKSTGSDAPGSS
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaataataatagtagtaatcctggaagaagtattggggttccgccctcgtttgtgaat
tctgttgcaaaggcacaatctatgcacgtgaaccaccaagcaccgcagttgctatcacag
tcacaacctcaaacacaagttgggcatccgggccactttcagctgtccgagccgcaagct
caggtcctgggacatgctcagtatgcacaggcagctcatgctcactttcaatctcagata
caattggccaaccaatccattgctcagttgcaaaatgtcaattctggtaatgttggtgta
caatcacctcctgtagccacgcctagcattactagtgctaaaaagtccagccataaaccg
ccttcaaggccttcaggtggttcatcaaatgccaacatggcttcactgtttaagaccatg
gagttgactccagctgctcataggaagaaaaggaagcttcatgagaaggagatacctgaa
aaagtggcagctcttttgccagagtctgcactttatacccagctgcttgaatttgaggct
agagcggatgctgctatggcaagaaagaagatggatattcaagagtcacttaaaaaccct
ccacgtgttcggaaaacacttcgggtatatgtatttaacacttttgaaaatcaggtgcaa
ggggctaacgagaggaagaatgctgagcctccttcttggtcattaaagatcattgggagg
atattggaagatgggaaagaccctgtgctgactggaatgatccagaaatcatatccaaaa
ttctcgtcttatttcaagaaaattacaatatacttggaccagagcctgtatccagataac
catgtaattttatgggagagcacacggtcacctgttcttcatgagggctttgaggtcaag
agaaaaggaaataaggaatttactgcaagaattaggctggaaatgaattatgtgcctgag
aaattcaagctttcacctgctctttcagaagtccttggaattgagatagagactcgcccc
agaattttggcggcaatttggcattatgtgaagtctaggaagttgcagaacccaaatgat
ccctccttcttcacatgtgacccccttcttcagaaactatttggggaagagaagatgaaa
ttttctctggtttcacagaagataagtctgcatttaacccctccacagcctattcatttg
gaacataagatcaagctctcagggaatttcccagctggaactacttgctatgatttcata
gtcgatgttccttcaccattacaaaaggaccttgctgcgtacttgaccagcacagagagt
aacaaagaaattgatgcttgtgatgaattaataagtaactctatactgaagatacatgag
catcgtcggaggcgggctttctttcttggtttcagtcagtctccagcagagtttattaat
gctttgattgcttctcagagcaaagatctgaagcttgtcgctggagatgctagccgcaat
gcagaaaaagagcagcgatctggtttctataatcagccatgggtggaagatgctgttatt
cgttacctaaatcgcaagtctacaggaagtgatgctcctggaagctcttga
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