Populus trichocarpa (black cottonwood): 7454700
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Entry
7454700 CDS
T01077
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
7454700
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
7454700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IP5PC_F
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_RIG_2nd
WDR54
VPS8_N
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
FUT8_N_cat
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
7454700
NCBI-ProteinID:
XP_002322240
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Position
15:complement(11574685..11578813)
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AA seq
478 aa
AA seq
DB search
MGKGNGSDEVLVVCSDRNMGTGIAMWDMETGDRIMHIPTCASPLHGLLCLRDQFLVASQV
NKHGSVGGGAIFTWSLNKPQQPLRSYPLEAIGPLGCTKDGLFLAGGSPSGNVYLWEVAGG
RLLKTWRAHSRSLKCLIFSNDDSLLISGSEDGVVCVWSMVSLLDTEDFGSSCSLLHYSSE
HTSSVTGLLTTSGIANSTFISSSLDATCKAWDVFSGRLIQTQDYPLGITAIVTDPAEQLL
FAGSMDGRIFVSVLDIGLLEDPFAVAGDEPVVLKGHNGSIMALTFSSVGLISASEDCTVC
LWDVVGQVIIRRFNHKKGAVTNLVVIPRSLLHSASNHRRVSNQFRISVLSKCPQPANSSN
GILTLLHTCSSPKDHQASVDLRRTNSLDQQIFEMEQEQTPAAMQMKVETSMDHRTWARRM
TNHVMEMNSHLQSRLLDLMQTRLLLATENDSPTTGKSKKLKIESPPLQQQEKISQPPS
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagggaaatggaagtgatgaggttttggtggtgtgtagtgataggaatatgggg
acagggatagcaatgtgggatatggaaacaggagatcgtattatgcatataccaacttgt
gcttctcctcttcatggcttgttgtgtctgagagatcagtttcttgtagcttctcaggtt
aacaaacatgggtctgttggtggcggggctatcttcacttggtcattgaacaagcctcaa
caacctcttcgaagctacccgcttgaagccatcggcccacttggttgcaccaaggacggc
ctgtttcttgcaggtggttctccgtctggaaatgtttacctctgggaggttgcaggtgga
agattactgaaaacctggcgtgcgcattccaggtccttgaaatgcttgattttctctaat
gatgactctcttcttatttctggttcagaagatggtgtggtctgtgtgtggtctatggtt
agcttgctagatacagaagattttggaagctcatgttcattgttgcactactcgtcggag
catacatcctccgtcaccggtctgttgacaacatcaggcattgcaaactcaacttttata
tcaagttctcttgatgctacatgcaaggcttgggacgtgttctcgggtaggcttatacaa
actcaggattatccactggggataactgcaatcgtcactgatccagcagagcagctcctg
ttcgctggaagcatggatggaagaatatttgttagcgtgcttgatattggactcctggag
gatccttttgctgttgccggagatgaaccagttgtgctaaaaggacacaatggatctata
atggctttgaccttcagctcggtcggtctgatatctgcttctgaggattgcactgtctgt
ctctgggatgtcgttggtcaggtgataatacgaagatttaaccataaaaaaggggcagta
accaatcttgtagtgattccacggtctttgctgcattctgcatcaaaccatcgaagagtt
tccaatcagttccgcatttcagtgctcagtaagtgtcctcagccagccaactcatctaat
gggattctcactctccttcacacatgttcttcccccaaggatcatcaggcttctgtggat
ctcagaagaaccaattcattggatcagcaaatatttgagatggagcaagaacagacacct
gcagccatgcaaatgaaggtagaaacaagcatggaccatcgtacatgggctagaaggatg
acaaatcatgtcatggaaatgaacagccatttgcaatctcgtctgctcgacttgatgcag
actcgattgttattagctactgaaaatgattcacccactacaggaaagagtaagaagctg
aagatcgaaagtccaccactacaacaacaagagaagatatcacaaccccctagttaa
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integrated database retrieval system
