Populus trichocarpa (black cottonwood): 7454916
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Entry
7454916 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 12 isoform X2
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7454916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7454916
03036 Chromosome and associated proteins [BR:
pop03036
]
7454916
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7454916
Coactivators
SAGA/TFTC/STAGA complex
7454916
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
7454916
STAGA complex
7454916
TFTC complex
7454916
SAGA complex
7454916
SLIK complex
7454916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
Histone
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
7454916
NCBI-ProteinID:
XP_024460219
LinkDB
All DBs
Position
6:6214857..6223088
Genome browser
AA seq
454 aa
AA seq
DB search
MDRPAPTTSTSTPPITKQPTEPPPSQPLPQPQPQPQPQPQPSSSTASPNPNLNPNPPTKP
SISAATTITTTPSSTRPQTVHRPWQHPHPHSQFPSVSSGPPIPSSSSTTPSISSPRGVAL
GVPAPSPASFSSSFGHQFVGLNRAPVNVPESVANTSNSQVRQGVMASMASNSQMRPHQQR
PVQSSLRPPTSSPNTQNFPGHVFIRSTPVGTAGSPVPNTSQSLQSPNQLWLSSASQGKPP
LPSPSYRPQMNSPSLQQRSHIPPQHHSPPTTSQQQHMSPAQPQQPLQSHQQPEHYGQQFP
PSRVQQSLSPLQQVSRVQGSVNHKPSSLAMSHPNTVQPLPQNSIANAESDESGNRILSKR
SIHELVSQIDPSEKFNPEVVEILADIADEFLVSVTTFGCSLAKHRKSDTLEAKDILLHLD
RNWNMTLPGFCGDEIKSYRKQVTNDIHKERLAAV
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggaccgaccagcccccaccacctccacctctactccccccatcactaagcaacctacg
gaaccaccaccatctcaaccactaccgcaaccgcaaccgcaaccacaaccacaaccacaa
ccatcctcctccacggcctctccaaaccctaatcttaaccccaacccacccacaaaacct
tcaatatcagcagcaacaacaatcaccaccacccccagcagcacaaggcctcagacagtg
cacaggccatggcagcacccccacccccactcccaattcccgtctgtttcttcgggccct
cctataccatcctcctccagcacgaccccttctatttcttcgccacgcggtgttgcccta
ggtgttcccgcgccttctcccgcgtccttttcttcttcatttggtcaccagtttgttgga
ttgaaccgcgctcctgtcaacgtgcctgagtccgtagccaacaccagcaactcgcaggtg
aggcaaggggtgatggcttcaatggcgtcgaattctcaaatgcgaccacatcaacagaga
cctgttcaatcatctcttcgaccacccacttcttccccaaatacccaaaatttcccaggg
catgtatttataagatccacaccagtaggtacagcaggttctcctgtgccaaacacatcg
caaagtttgcagtcccccaatcagctgtggttgtcatctgcatctcaagggaagcctcca
ttgccttccccttcatatagacctcagatgaactctccgtcactgcaacaaaggtcacac
attccaccacagcatcattccccaccgacaacttcacagcaacagcacatgtcacctgca
cagccacaacaacctttacaatcccatcaacaaccagagcattatggccagcaatttcca
ccatcaagagtccaacaatccttatcccctctgcaacaagtttcaagggttcaaggttca
gtaaatcataagccatcttccctagcaatgtcacatcctaacacagtacaaccattgccg
cagaatagtatagctaatgcagaaagtgatgaatctggtaaccggattcttagcaaaaga
agcattcatgagctagttagtcagattgatccatcagagaagttcaatcctgaagttgta
gagattctagcagatatagcagatgaatttcttgtgtctgtcacaacatttggttgctca
ttggccaagcatcgaaaatcagatacattggaagcgaaagacatacttctacatcttgac
agaaactggaatatgacactaccagggttctgtggtgatgagattaagagctacagaaaa
caagtaacaaacgatatccacaaggagcgccttgcggcggtctag
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integrated database retrieval system
