Populus trichocarpa (black cottonwood): 7454926
Help
Entry
7454926 CDS
T01077
Name
(RefSeq) transcription factor MYB3R-5 isoform X1
KO
K09422
transcription factor MYB, plant
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7454926
Transcription factors [BR:
pop03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
7454926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
DUF6581
Myb_DNA-binding_2
Motif
Other DBs
NCBI-GeneID:
7454926
NCBI-ProteinID:
XP_002308158
LinkDB
All DBs
Position
6:6376835..6383538
Genome browser
AA seq
549 aa
AA seq
DB search
MSMSSSSIPATSLEAEKEEMDELKIEERCLENKQLTPASSSSQSEEGSGSAILKSPGVYS
PATVSPTNRRTTGPIRRAKGGWTPEEDETLRTAVATYKGKSWKKIAEFFPDRSEVQCLHR
WQKVLDPELVKGPWTQEEDDKIVELVAKYGPTKWSVIAKALPGRIGKQCRERWHNHLNPD
IKKDAWTLEEELALMNAHRIYGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLDFYLSTGK
LPPISKNGFQNGTKDTNKSAVMKTMKESDSAAQTSSGTTDICKLDEDGKDQLESTLVLDV
AASSSVLPNEYADSVDLSCCDSESQQKFEDHQDKGIGSGLQFDRSTYGSLYYEPPLVEQL
DSYPSNMGSVQHENNSCPVSSPIIFFTPPCVKSRDLSAQSPESILRIAAMSFPNTPSIFR
KRKTAQVDLLPSKIGKVGEETVKDRLDMSVEHEKIENTLEKTAAQDGSLCESPASLGNGT
IRPNDKPFNASPPYRLRSKRTAVFKSVERQLEFTFEKGRSDGTKPTRLSVKRGSPVSEDC
SRATKMGVT
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgagttcctcttcaattcccgccacttctcttgaagcagagaaagaggagatg
gatgaactaaagatagaagagcgctgccttgaaaacaagcaattaacacccgcttcgagc
tcctctcaatctgaagaaggtagtggcagtgctattcttaagtctcccggagtttatagt
ccagccacggtatcgccgactaacagaagaactacaggcccaattaggagagccaaaggt
ggttggactccggaggaggatgagacattaagaactgctgttgcaacttataaggggaaa
agttggaagaaaatagctgagttttttcctgatagatcagaagtgcaatgtctgcatcga
tggcagaaggttcttgatccagaacttgttaaaggaccttggactcaagaggaggatgat
aaaattgttgaactggtagcaaaatatggacccacaaaatggtctgtcatagcaaaagct
ttacctggtcgtatagggaagcaatgccgagagaggtggcacaatcatttgaatcctgat
ataaaaaaggatgcttggacattggaggaggaattggcacttatgaatgcccatcggata
tatggaaacaaatgggctgaaatagcaaaggttctgcctggaaggactgataattcaatt
aaaaaccactggaatagttccttgaagaaaaaattagatttttatctgtctacggggaaa
ctacctccaatttcaaagaatggtttccaaaatggaactaaagatacgaataaatcagct
gtgatgaaaacaatgaaagaatcagattcagctgcccaaacttcgtcaggaactactgat
atatgtaagctagatgaagatggaaaagatcagttagagtctacattggtgctagatgta
gcagcttcatcaagtgttcttccaaatgagtatgctgattctgtagatcttagctgctgt
gattcagagtcgcagcaaaagtttgaagatcatcaagacaaaggtattgggtctggattg
cagtttgacaggtcaacttatggttctttgtattatgagccaccactagtagaacaattg
gattcatatccttcaaacatgggtagcgtgcagcatgagaacaattcttgcccagtttca
tctcctattattttcttcaccccaccttgtgtaaagagtcgtgatttgagtgcacaaagt
ccagaatctatattgagaattgctgcgatgagcttccctaataccccttcaatatttcga
aagaggaagactgctcaagtggatctgcttcctagtaaaattgggaaagtaggtgaggaa
accgtcaaagacaggttagacatgtctgttgaacatgaaaaaattgaaaatactttggaa
aagacagctgctcaagatggaagtttgtgtgagagtcctgcttctttgggtaatggtact
attcggcctaatgataagccctttaatgcttctcctccatatcgattaagatccaaacgg
actgctgtcttcaagtcagtggagagacaacttgagtttacatttgaaaaaggcaggagt
gatggtaccaaaccaacgagattatccgtgaaacggggctctcctgtttctgaagattgt
tctcgtgcaacaaagatgggggttacctag
DBGET
integrated database retrieval system
