Populus trichocarpa (black cottonwood): 7454930
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Entry
7454930 CDS
T01077
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
7454930
Enzymes [BR:
pop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
7454930
Transfer RNA biogenesis [BR:
pop03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
7454930
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GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-GeneID:
7454930
NCBI-ProteinID:
XP_024459126
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Position
6:complement(6458409..6465304)
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AA seq
797 aa
AA seq
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MISVRAVNSCSIFRSSPPVSSFRCRLNSHLRTTTSSSHHDRYSKSGFGFPVFRFDLPILG
HGDVRSYSLQSFVDTVLEELASYRKRKRQGICSAIKLTTGGEALDDKLVNQAVEKGLLVE
FKKDSERVLLAVVQRRDGKKNWMVYDQNGVTSSIKPQQITYIVPGVDNFDQTQISSFIQK
AQQNLDSSLLEFAWIELLEKNKSVTPEELAEMIFGSVEPLESYCAHLLLSEDDLYFTVLE
TKGYRSIYGPRPPMQVEELMRRKLAKEAAEKELQEFVQLLKSAKAMPSNAKPPKTSWVVE
EKIRCKIESLEAYAIDACKNNDQKRIAGMILTAMGMGKTASSALNLLIDIGYFPVHVNLD
MLKLNIHTDHPDEIISAAEDLLSEPVDPDKINRKDLTHLKVYAIDVDEADELDDALSATR
LQDGRIKVWIHVADPARYVQPGSKVDREAMRRGTSVFLPTATYPMFPEKLAMEGMSLKQG
EVCNAVTVSVILHSDGCIAEYSVDNSIIKPTYMLTYESASELLHMNLDEEAELKLLSEAA
SLRLQWRCEQGAVDTATLETRIKVPNPEDPEPSINLYVENQADPAMRLVSEMMLLCGEVI
ATYGSCNNIPLPYRGQPQSNIDVSAFAHLPEGPVRSAAIVRIMRGAEIDIRKPIRHGVLG
LPGYVQFTSPIRRYLDLLAHYQVKAVLRGDSPPLSAGQLEGMASLINMQTRVVRRLCSSS
LQYWMIEFLKRQPKEKKYRALILRFIKDRVAALLLVEVGLQATAWVSLGTQIGDEVQVRV
EEAHPRDDIISLKEVVV
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgatttcggttcgagccgttaactcttgctctatatttcgctcatcacctcccgtttct
tccttccgctgccgtctcaatagccatttgaggaccaccacctcctcctcgcaccatgac
cgctactccaaatcaggctttggcttccctgtgttccggttcgaccttccaattcttggt
catggcgatgtacggagctactcccttcaaagtttcgttgatacggtgttggaagagctg
gcttcttatcgcaaacgcaaacgccaaggcatttgctctgctatcaaattaacgacgggt
ggagaggctttagatgataaactggtgaaccaagcggtggagaaaggattattagtggag
ttcaagaaggattcagagagagtattgctggcagtggtgcagagacgtgatggaaagaag
aattggatggtgtacgatcagaatggtgttacttcctcgattaaaccccaacaaattact
tatattgttcccggtgttgataattttgaccaaacccaaatctcaagctttattcagaaa
gctcagcaaaacttggactcctcgttgcttgagtttgcttggattgagcttcttgaaaag
aataagtcagttacaccagaagaattagccgagatgatttttggcagcgtggagcctctt
gaaagttattgtgcccatcttttgctatcagaggatgatctatatttcactgtgctggag
acaaaaggttatcgctctatttatgggcctcgacctcctatgcaggtagaagaacttatg
cgtaggaagcttgcaaaggaagctgctgagaaagaacttcaggagtttgtgcaactacta
aaatctgccaaggcaatgccttcaaatgcaaaaccccccaaaacttcatgggtggttgaa
gagaaaatccgatgcaaaattgagtctcttgaagcatatgcaattgatgcatgcaaaaac
aatgaccaaaagagaattgcagggatgatcctcacagcaatgggaatggggaaaacagca
tcctctgcattaaacctcctcatagatattggatactttcctgtccatgtcaatcttgat
atgttgaagctcaacattcatactgatcatccagatgagatcatatcagctgctgaagat
cttctatcagagccggttgaccccgacaagattaacagaaaagatctcactcacttgaaa
gtctatgccattgatgttgatgaggctgatgagcttgatgacgcattgagtgcaacgagg
ttacaggatgggcgaattaaagtttggatacatgttgcagatccagcgcggtatgtacag
ccagggagtaaagtagacagagaggcaatgagaagagggacttctgttttcttgcccacc
gctacttatcccatgtttccagagaaacttgcgatggaaggaatgagtttgaaacaggga
gaggtttgcaatgctgttactgtatctgttattctgcattctgatggctgcattgcagaa
tactctgtggataactcaatcattaaaccaacctatatgctgacatacgagagtgcatct
gagctgcttcatatgaacctggatgaggaagctgaattaaaacttctttctgaggctgca
tctcttcggttacagtggcgttgtgaacagggtgcagttgacacagccacattagaaact
cgcatcaaggtccctaatccagaagatccagagccttcaattaacctctatgttgaaaac
caggctgaccctgcaatgcgacttgtctctgagatgatgttactttgtggggaagttata
gccacttatggctcttgcaacaatattcctttaccctatagggggcagccccaatcaaat
attgatgtatctgcattcgcacatcttcctgaaggacctgtcaggagcgcagctattgtt
cgaataatgcgcggtgctgaaatcgatatcaggaaacccatacgccatggagtcttggga
cttcctggttatgttcagtttacttctcccatccgtagatacttggatcttcttgctcat
tatcaggtcaaagcagttcttagaggcgactcccctcctctctctgctggtcagctggag
ggtatggcatcactaattaacatgcaaactagggtagtaaggaggctctgcagcagcagt
cttcaatattggatgatagaattcttgaaaaggcaaccaaaggagaaaaaatatcgtgca
ttgatcctcaggttcattaaagatcgggttgcagctctgctactagttgaggtggggctt
caagcaactgcctgggtgtctctgggaacacagataggagatgaagtgcaagttagggta
gaagaagctcatccacgtgatgatattatttcccttaaggaggttgtagtataa
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