Populus trichocarpa (black cottonwood): 7454931
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Entry
7454931 CDS
T01077
Name
(RefSeq) RHOMBOID-like protein 1 isoform X1
KO
K27605
rhomboid-like protein, plant [EC:
3.4.21.105
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7454931
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.21 Serine endopeptidases
3.4.21.105 rhomboid protease
7454931
Peptidases and inhibitors [BR:
pop01002
]
Serine peptidases
Family S54: Rhomboid family
7454931
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhomboid
DUF7374
DER1
Motif
Other DBs
NCBI-GeneID:
7454931
NCBI-ProteinID:
XP_024459127
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Position
6:complement(6465104..6469058)
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AA seq
399 aa
AA seq
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MEKEQYPVPPSEIQTRVNSRRGGNNSIIHPVEMETPNHQVSLAVASSSSPSPVVHGKARP
FKKWWPWLIPAFVIANVVMFIITMYVNNCPKNYVSCIARFLGRFSFQPFKENPLLGPSSI
SLQKMGALDVQKVVDGHQWWRLITCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGL
LYVISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYANKVAAFITLVVI
IAVNLALGILPHVDNFAHIGGFLSGFLLGFVFLIRPQFGWFSQRRAPLGYIPASVKSKFK
TYQCALWIISLILLIAGLTIGMVLLLRGVDANEHCSWCHYLSCVPTGKWSCKTEPAYCLS
TQIGNQLNLTCSSNGKSSVYILPGATSSQIQGLCTGLCR
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagagcaatatccagttcctccatcagagatccaaaccagggtgaattcaaga
agaggaggaaacaactctattatacacccagtagagatggaaacacctaatcatcaagtg
tcgctggcagtggcatcatcatcatctccaagtccagtggtgcatggaaaagccaggcct
ttcaagaaatggtggccttggttaatacctgcttttgtgattgccaatgttgttatgttt
attatcactatgtatgtcaacaactgtcccaagaactatgtctcttgtattgctcggttc
ttgggtaggttctcttttcagcccttcaaagagaaccctcttcttggtccttcatccatt
tcgctacagaagatgggggctctagatgtacagaaagtggttgatggacatcagtggtgg
cggctcatcacctgcaattggttacatggaggggtttttcatttgttggcgaatatgcta
tctcttctggttattggcattcggctcgagcaggaatttgggtttgtaaaggttggtttg
ctatatgtcatctctggatttggtgggagtttgctatcggctctttttatccaatcgaat
atctctgttggtgcttctggtgcactttttggtttacttgggagcatgctctctgaactc
atcacaaattggactatatatgctaacaaggtggcagctttcattacactcgtggtgatc
atcgctgtcaatctagcattgggaattctaccacatgttgacaacttcgcccatattgga
ggatttctttctggttttctcctcgggtttgtgttcctgatccgcccacagtttggatgg
tttagtcaaagacgtgctcctcttgggtatattccagcctcagtaaaatctaagttcaag
acatatcagtgtgcattgtggatcatatctctaatccttttaattgctgggcttaccatt
ggcatggttctgcttctccggggagttgatgcaaatgaacactgttcatggtgtcattat
ttgtcttgcgtccctactggaaaatggagttgcaaaactgagcctgcatactgtttgtcc
acccaaataggcaaccagctgaacttaacgtgctcaagcaatggaaaatccagcgtgtac
atattgcctggcgcaacgagttctcagattcaggggttatgcactgggctctgccgttga
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