Populus trichocarpa (black cottonwood): 7454988
Help
Entry
7454988 CDS
T01077
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7454988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7454988
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7454988
mRNA degradation factors
5'-3' decay
Decapping complex
7454988
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
SUIM_assoc
Motif
Other DBs
NCBI-GeneID:
7454988
NCBI-ProteinID:
XP_002317021
UniProt:
A0ACC0S9G7
LinkDB
All DBs
Position
11:17316728..17324479
Genome browser
AA seq
806 aa
AA seq
DB search
MMMDGGGVEQTPKIGDNSTEDTVFDASQYAFFGKDLVEEVELGGLEDDEELPAVDLEEEE
FFFDRQEGEVLRSVSDVDDLASTFSMLNKVVSGPSTGIIGDRGSRESSSAAEWAQGEEFP
NWFDQQLLDPDGVQDGKRWSSQPYYSTARLAESKPLHRTSSYPEQQQQQQQQHQQPHHQH
YSSEPILVPKSSYTSYPIQGGQSPQASPNHSHLNIPYLSGGHQMALSSPNLPPFSNSQPL
LSSLHHGSPHYGGNLPQFSSGLSANSRPPSQWVNHTGLYPGEHPNRMNNMLQQPLSHQNG
LMPPQLMPQLQSQQHRLHPSIQPSLGHLSGMQSQVFNPHISPSPPMMNNFDTMLALADRD
QRPKAAQKVRAIMRYPQQGFDANGQKIDIGWPQFRSKHMTTDEIETILRMQLAATHSNDP
YVDDYYHQACLSKKTAGAKLKHHFCPTHLRDLPPRARANSEPHAFLQVDALGRIPFSSIR
RPRPLLEVEPPNSSVGGNAEQNSVEKPLEQEPMLAARVTIEDGLCLLLDVDDIDRFLEFN
QFHDGGAQLMRHRRQVLLEGLAASMQLVDPLGKNGNTVGLAPKDDFVFLRLVSLPKGRKL
LARYLQLLFTGSDLMRIVCMAIFRHLRFLFGGLPSDLGAAETTNNLSRVVSLCVRRMDLG
SLSACLAAVVCSSEHPPLRPLGSSAGNGASLILMSVLERAAELSNDPHDATNYNVTDQAL
WKASFDEFFGLLIKHCINKYDSIMQSLSDSDPAEAIKRELPMELLRASVPHTNDYQKKLL
YDLSQRSLVGQDGGNGGHINSQAVLS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggatgggggtggcgtcgagcaaactcccaagattggagataactctacagaa
gacactgtatttgatgcatctcaatatgcattctttggtaaagatcttgttgaggaagtt
gagttaggcggattggaggatgatgaggagttgcctgcagttgatttagaagaggaggag
tttttctttgatagacaagagggtgaggttttaagatccgtatctgatgttgatgatctt
gcaagtacattttcaatgttgaacaaggttgtgagtggaccaagcactgggataattggt
gataggggctctagagaaagttcatctgctgctgaatgggcacagggagaggaatttcct
aactggtttgatcagcagctacttgatccagatggcgttcaggatggcaaaagatggtct
tcacagccatattactctactgctcgccttgcagaatcaaagcctctgcacagaacctct
tcataccctgagcagcagcagcagcagcagcagcagcaccaacaaccacaccaccaacac
tactctagtgaacctattcttgtgccaaaatcttcctacacttcatatcctatccaaggt
ggacaatctccacaggcttcaccaaaccacagtcatctaaatattccatatctttctggt
ggccaccagatggcgttatcttcaccgaatctccctcccttctctaattctcagcctctg
ctaagcagcttacatcatggatcaccacattatggtgggaatttgcctcaatttagttct
ggtctttctgctaatagccggccaccaagccaatgggtcaaccatacaggcttatatccc
ggagagcatcccaatcgcatgaacaatatgttgcaacaaccattatctcatcaaaatggg
ctaatgcctccacagttgatgccacaactgcagtcacaacagcataggctgcacccctca
attcagccatcattgggccatctatcagggatgcagtctcaagtatttaatccccatatc
tctccatccccacctatgatgaacaactttgacacaatgcttgctcttgctgatagggat
caaagaccaaaagctgctcagaaagttagagcaattatgcgatatcctcagcaaggcttt
gatgccaatggtcagaagattgatattggctggccacagttcagatccaagcatatgacc
actgatgaaattgaaactattctcagaatgcagctggctgcaacacacagtaatgaccca
tacgtggatgattattaccaccaggcatgcctttcaaaaaaaacagctggggcaaagctc
aaacatcatttctgtccaactcacttgagggatcttcctccccgagcacgtgctaatagt
gagccacatgcttttctccaggtagatgctcttgggagaattcctttctcttcaattcgt
aggcctcgcccacttctagaagttgaacctccaaattcatctgttggtggcaatgctgag
cagaattctgttgagaagcccctagaacaggagccaatgcttgcagcaagagtcacaatt
gaagatggtctctgccttcttcttgatgtagatgatattgatcgttttttagaattcaat
caattccatgatggtggagcccagttgatgagacacaggaggcaggtcttgttggaaggg
ctggcagcatctatgcaattggtcgacccgcttggcaagaatgggaatacagttggactt
gctcccaaggatgattttgtgttcttgcgattagtatctcttcccaagggacggaagctt
cttgcaaggtaccttcagcttctttttacaggcagcgatctcatgcggattgtttgtatg
gccatttttcgtcatttaaggtttttgtttggaggtctcccttctgatctcggagctgca
gaaaccacaaataacctttcaagagttgtatctttatgtgtacgtcgcatggatcttggt
tcacttagtgcttgtctcgctgcagtggtttgctcctcagagcatcccccacttcgcccc
cttggaagctcagctggaaatggggcttccctcattttgatgtctgttttggagagagca
gctgaactatcaaatgatcctcatgatgctaccaactataatgtgacagatcaggcactt
tggaaggcctcatttgatgagttttttggcctccttatcaagcattgcataaataaatat
gatagcatcatgcagtctctatcagattcagatccagccgaagctattaagagggaacta
cctatggagctcttacgtgcaagtgttccccatactaatgactaccagaagaagctgttg
tatgatctttctcaacgttccttggttggtcaggatggtggtaatggtggccacatcaat
tctcaagcagtgctgagttaa
DBGET
integrated database retrieval system
