Populus trichocarpa (black cottonwood): 7455043
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Entry
7455043 CDS
T01077
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7455043
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7455043
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
7455043
Membrane trafficking [BR:
pop04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
7455043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
COG2_C
Motif
Other DBs
NCBI-GeneID:
7455043
NCBI-ProteinID:
XP_024437260
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Position
11:18114815..18125583
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AA seq
1031 aa
AA seq
DB search
MDSLPSFNSNSNSNSNSPLKKSLSDTTNIQNLSSILNNPHSFKSTDPSAWLGWWSSSTTL
APPDFSPILPKQPPPDISRSDFLPYLSAVSDTYSRFEDIKNHSKNNDLDQESKSDLADAE
SNSDLAAVGQGEALVACLREVPALYFKEDFALEDGPTFHAACPFSNAAANLMLQEKLSQY
LDVVELHLVKEISLRSNSFFEAQGQLEDLNGKIVEGCERIRELKETIRVLDKDLVESARE
IHELNVSRGDLVSLQNKLRLILYVNQALSTLKLLVASADCAGALDVTDDLQQFLDGDELT
GLHCFRHLRDHVAAAIESINSILSAEFMRASIHGAGDKDLLFLSKAKARDSIYMNGIDEE
QVKLDDEETSNFRDHLLPLIVGLLRTAKLPPVLRIYRDTLTASMKNTIKNAVAELLPTFS
AQSLESDLTPAERTADTDGGGLSLASKLRSLSSENFVLLLSAIFNIVQAHLVRAAEVKKA
IEWIMCSVDGHYAADSVAAAIAVGAAAAETAHESDGLGGSLLPFSPQRSTSKFASSQLKA
NDAASPSNISRNFRADVLRENAEAVFAACDAAHGRWAKLLGVRALLHPKLRLVEFLSIYN
ITQDFITATEKIGGRLGYSIRGTMQSQAKAFVDFQHEMRMTKIRAVLDQEMWVEVDVPDE
FQAIVASLFYSESVGLNDTQGDATTRYGEVGTGNDGSLVIDAEAQNAEQELVQMNSTDIS
LENSVQKKSTPSTEATESNKVIAATSSAHSNNHNAKERGKSTSQTLSCGGVGYHMVNCGL
ILLKMLSEYMDMNNFLPTLSSEVVHRVVEILKFFNTRTCQLILGAGAMQVSGLKSITSKH
LALASQVIGFVHAIIPEIRRVLFLKVPEARKVLLLSEIDRVAQDYKVHQEEILTKLVQIM
RERLLHHLRSLPQIVESWNRPVDTDSQPSPFALTLVKEVTYLQRILSRTLHEADIQAIFR
QVVTIFHKEISEAFSRMEISSQQAKFRLHRDITLILGCIRSLPSGNLSESGTPNWGQLDE
FLVQRFGSEAG
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggattctctcccttccttcaattccaattccaattccaattccaattcccctctcaaa
aaatcactatctgataccacaaatatccaaaacctctcctccatcctcaacaaccctcac
tccttcaaatccaccgatccctccgcctggctcggctggtggtcctcctccaccactcta
gctcctcctgatttctcccccatactccccaaacaaccgccacctgatatttcccgatcg
gatttcctcccctacttatctgctgtctccgacacctactcccgcttcgaagacatcaaa
aaccactctaaaaataacgaccttgatcaagaatcgaagtcggatttggcggatgcggag
tccaattcggatttggctgctgtagggcaaggggaggcgctggttgcgtgtttgagggaa
gttccggcactgtattttaaagaggattttgcgttggaagacgggcccacctttcatgcc
gcgtgtccgtttagcaatgcggcggcgaatttgatgttgcaggagaagttgagtcagtat
ttggatgtggtggagttgcatttggtgaaggagatatcgttgcggtcgaattcgtttttc
gaggcgcaagggcagttggaggatttgaatgggaagattgtggaagggtgtgagaggatc
agggagttgaaggagactattagggttttggataaggatttggtggagtcggcgagggag
attcatgagctgaatgttagtagaggggatttggtttctttgcagaataagttgaggctt
attttgtatgttaatcaggctctctccacgcttaaattgcttgttgcatctgcagattgt
gccggagcattggatgttactgatgatttgcagcagttcttggatggagatgagctgact
ggtctacattgttttcgtcaccttcgggatcatgtggcagctgcaatagagtccataaac
agcatcctttcagcagaatttatgcgagcttcaatacatggtgctggggataaagatttg
ctttttttatccaaagcaaaagccagggattccatatatatgaatggaatagatgaagaa
caggttaagttggatgatgaagagacgtccaattttcgagatcatcttcttcctctcatt
gttgggttacttagaactgccaagctcccccctgtgttgagaatataccgagataccctt
acagccagtatgaaaaacaccattaagaatgcggttgcagagctgcttcctaccttttca
gcccaatctctggagtcagatctcacacctgcagagcgaacagcagatacagatggtgga
ggtttatcacttgcaagcaagttaaggagcttgtcatccgaaaattttgtgctactttta
agtgctattttcaacattgtacaggcacacttagtgcgggctgctgaagtgaaaaaggca
attgagtggattatgtgtagcgttgacggacactatgctgctgattcagttgctgctgca
attgcagttggtgcagcagctgctgaaacagctcatgagagtgatggtctaggtggttct
cttctccccttttctccacagagaagtacttccaagtttgcttcatctcagctgaaagca
aatgatgcagcaagtccctcaaatatttcaagaaattttagagccgatgtattgagagag
aatgcagaagctgtctttgctgcttgtgatgctgctcatggaagatgggcaaagctcctt
ggtgtccgtgctcttcttcatccaaagttgagattggtggagtttttaagcatatacaac
atcacccaagattttataactgccactgaaaagattggtggaaggttgggttatagtatt
cgtggaacaatgcaatcacaggctaaagcttttgttgatttccagcatgaaatgcgaatg
acaaaaattagggcagtgcttgatcaggagatgtgggtggaagtagatgtccctgatgaa
tttcaggccattgttgcttcattgttttattctgaatctgtgggcctaaatgatactcaa
ggtgatgcgacaaccagatatggtgaagtgggcacaggcaatgatggttcacttgtgatt
gatgctgaagcacaaaatgctgaacaagaacttgtgcaaatgaactctacagatatatct
ttggaaaattctgtgcaaaagaaatctactccctcaacagaggcaactgaaagcaataaa
gtcatagctgcaacttcatcagctcatagtaacaatcataatgcgaaggagcgtggaaaa
tctacttcccaaacactttcttgtggaggtgttggttatcacatggtaaactgtggctta
atattgctgaagatgttgtcagaatacatggatatgaataattttttgccaacactatct
tcagaagttgttcatcgtgtcgtggagatcttaaaattcttcaatacaaggacttgccaa
cttattcttggagctggtgccatgcaggtgtcgggtctgaagtctattacctcaaagcac
ttggcccttgctagtcaagtcatcggttttgtacatgccattattcctgaaatcaggcga
gttcttttccttaaagtacctgaagcacggaaagtattactgttgtcagagattgatcga
gtagcacaggattacaaggttcatcaagaggagatacttacaaagctggttcagataatg
agggaaaggttgttgcatcatctacgtagtctgcctcagattgttgagagctggaataga
cctgtagatactgattcacagcctagtccttttgctctaacgcttgtaaaggaggttacc
tatcttcaacgaatcttatctagaactttacatgaagcagatattcaagcaattttcagg
caagtggttacaatctttcataaagaaatttcagaagcattttcacggatggagatcagc
agtcagcaagcaaagttcaggcttcatcgggatattacacttatccttggatgcatcaga
tcattaccttctggtaacttgagtgaatcgggtaccccaaattggggacaacttgatgaa
tttttggttcaaagattcgggtctgaagctggctga
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