Populus trichocarpa (black cottonwood): 7455213 Help Entry 7455213           CDS       T01077                                  Name (RefSeq) THO complex subunit 2   KO K12879   THO complex subunit 2 Organism pop  Populus trichocarpa (black cottonwood) Pathway pop03013   Nucleocytoplasmic transport pop03040   Spliceosome Brite KEGG Orthology (KO) [BR:pop00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     7455213   09122 Translation    03013 Nucleocytoplasmic transport     7455213  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pop03019]     7455213    03041 Spliceosome [BR:pop03041]     7455213 Messenger RNA biogenesis [BR:pop03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      7455213 Spliceosome [BR:pop03041]  Complex C   Other components    EJC/TREX     7455213  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     7455213 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 FlxA Motif Other DBs NCBI-GeneID:  7455213 NCBI-ProteinID:  XP_024447144 LinkDB All DBs Position 19:9231481..9259618 Genome browser AA seq 1880 aa AA seqDB search MSTTLPPMECLYVTEEFLRELKGGNHSFRLPHPVPILRFLYELSWNLVRGELPFQKCKAA LDSVEFVDKVSAVGLGSNFADIITQMAQDLTMSGEYRSRLIKLAKWLVESALVPLRFFQE RCEEEFLWEAEMIKIKAQDLKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLYQGSE DTTENTSAATIGIIKSLIGHFDLDPNRVFDIVLEYFELQPDSNVFLELIPIFPKSHASQI LGFKFQYYQRIELNSHVPFGLYKLTALLVKEEFIDLDSICAHLLPKDDEAFEHYNTFSSK RLDEANKIGKINLAATGKDLMDDEKQGDVTVDLFAALDMEAEAVAERFSELENNQTLGLL TGFLSVDDWYHAHVLFERLSPLNPVAHTQICNGLFRLIEKLVSSAYNIIRQTHIQSCGSP RIAGIDAMGVTSSSGHVSFIDLPKEFFQMLVTVGPYLYRDTLLLHKVCRVLRGYYMSALE LVDSGDGALNGELLIPGNRVPRLHLREARSRVEEALGACLLPSLQLVPANPAVGQEIWEV MSLLPYEVRYRLYGEWEKDDERNPVILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLA HANPMTVLRTIVHQIESYRDMISPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDG LNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLGNQLKKGQGIELVLLQELLQQMANVQY TENLTEEQLDAMAGSETLRYQATSFGVTRTNKALFKSANRLRDSLLPKDEPKPAIPLLLL IAQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPPSAYAQLIPSLDDLVH LYHLDPEVAFLIYRPVMRLFKCAGSLDVFWPLENNKTVTNTSAILEPEAIECSGGVILDL GSSHKSVTWSDLLETVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIAKQHA ALKALEELSDNSSSAITKRKKEKERIQESLDRLTSELRKHEDNVSSVRRRLSCEKDKWLT SCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHVDVLICKTL QPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYEHECGNMPGFAVYYRFPNSQRVTY GQFIKVHWKWSQRMSRLLIQCLESSEYMEIRNALILLTKISGVFPVTKRSGINLEKRVTR IKSDEREDLKVLATGVAAALAARKPSWITDEEFGMGYLEIKPPSAASKSLSGNAAAAQNS SALNVSQGEPAEGRAPHTGSQHGDPGNSTREQISRAKHADGRSDRTDNVSHSKFDQGHQK SKGGSSTNGSNAQSAGSAAAVHVGASRSENRKGVDDSSNRTLEDGTVRAAPKNLAESEMK ISTKRLVSKTPKQDVVKDDNKSGKAVGRTPSSSTSDKDIQVHLSEGRQGGAANVSSALTL NGNAVSTSGKISTLSTRASDSYGAESKSDSGLNKPMPKAEATEVADVQKPPQLVHSPRHD NSVAASKSSDKLQKRASPAEEPDRSSKRRKGDGELRDLEGEVKFSERERSTDTRSADLDK VGNDEQNKHRSTDKPLDRSKDKGNDRYDRDHRERSERPDKSHGDDSLADRSRDKSMERYG RERSDERGMDRGTDRSFDRLADKAKDDRSKLRYNDTSAEKSQGDDRFHGQNLPPPPPLPP HMVPQSVTSGRRDEDADRRFGTTRHAQRLSPRHDEKERRRSEENSLVSQDDTKRRKEDDV RERKREEREGLSIKVEEREREREREKTHLLKEEMDAGAAAKRRKIKRDHLPTGEAGEYSP VAPPPPPLGSGMSQSYDGRDRGDRKGGTIQRTSYLEEPSIRIHGKDVAGKMARRDADPMY DREWDEDKRQRAEQKRRHRK NT seq 5643 nt NT seq  +upstreamnt  +downstreamnt atgtcaacaactctccctcccatggagtgtttgtatgtaactgaagaatttctccgtgaa ttgaagggcggaaaccatagcttccgtctccctcaccctgtgcctattcttcgatttctc tacgagctctcctggaacttggttcgaggagaactgccgtttcaaaagtgcaaagcggct ctggattctgtggagtttgttgataaagtgtctgccgtagggctgggttcgaatttcgct gatattattactcaaatggctcaagatctaacaatgtctggagagtaccgttctcgtctc ataaagttggcaaaatggctggtcgaatctgcattggtcccattgaggtttttccaagag cgttgtgaggaggaatttctgtgggaagctgaaatgataaagataaaggctcaagacttg aagggcaaagaggtcagggtaaacacacgtcttctttatcagcaaacaaaatttaacctt ctccgcgaagagagtgagggctatgccaaactggttactcttctctatcaaggttctgaa gatacaactgaaaatacatcagcagcgacaataggcatcattaagtcattgattggtcat tttgatttggacccaaatcgtgtttttgacattgttttagagtattttgaacttcagcct gatagcaatgtctttttggaattgatacccatctttcctaagtcgcatgcatcgcaaatt cttggttttaagtttcaatattatcagcgaattgaattaaatagccatgtcccatttggg ctctataagcttacagctttgctggtgaaggaagagttcattgatcttgatagcatatgt gcacatttacttcccaaggatgacgaggcttttgagcattataatacattttcttctaaa cggctggatgaggctaacaaaattggaaaaataaatctggctgctactggaaaagacctc atggatgatgagaaacaaggagatgtgaccgtagatctttttgctgccttagacatggaa gctgaggcagtagccgaacgattctctgagcttgaaaacaatcaaactttaggcttgcta actggtttcctttctgtggatgactggtatcatgcccatgtactttttgaacgtctctct cctctcaatccagttgcacatactcaaatatgtaacggcttatttaggctcattgaaaag ttggtctcatcagcatataatattattcgtcaaacacatattcaaagttgtgggtcacca agaattgctggtattgatgctatgggcgtgacaagttcttcaggccatgtctctttcatt gatcttcccaaagagttttttcagatgcttgtcactgttggaccttatctttaccgtgat acattattgctgcacaaggtgtgtagagtgttaagaggttactatatgtctgcacttgag cttgtagatagtggtgatggagctctaaatggtgaacttcttattcctggaaatcgagtt cctcgtttgcacctaagggaagctaggtcaagggttgaggaagcccttggagcatgttta cttccttctttacagttggtacctgcaaatccagctgttgggcaggagatctgggaagta atgagtctccttccttacgaggtgcgatatcgtttatatggtgaatgggaaaaagatgat gagcggaatccagtgattttggctgctagacaaacagccaagttggatactagaaggata ttgaaaaggcttgcgaaggaaaatttgaagcagctgggtaggatggttgcaaaattagct catgctaacccgatgactgtccttagaacaattgttcaccagattgagtcgtacagggat atgatctctcctgttgtagatgctttcaagtatttgactcagctcgagtatgatattttg gaatatgttgttattgagcggttagcgcaaggtggccgtgataagctgaaagatgatggc cttaatttgtcagactggcttcaatcactggcttcattctggggtcacctgtgtaagaag tatccatctatggaattgagaggccttttccagtatctaggaaatcagttgaaaaagggc caggggattgagcttgttcttctgcaggagcttcttcaacaaatggcaaatgttcaatac acagagaacctaacagaggaacagttggatgcaatggcagggagtgagactcttcggtat caagctacttcttttggtgtaacccgaactaacaaggcactgttcaaatctgctaacagg ctacgagactcattgcttcctaaggatgaaccgaagccagcgatcccccttttgttactt attgctcaacatcgttctgtggttgtcataaatgcggatgcaccttacattaaaatggtc agtgagcagttcgataggtgtcatggaacccttcttcaatatgtggaattcctctgtagt gctgtgacgccaccctcagcatatgctcagttgattccctctcttgatgatcttgtccac ctgtaccaccttgatcctgaggttgcatttttaatatatcgcccagtcatgaggcttttc aagtgcgctggcagtttagatgttttctggcccttggaaaacaataaaacagtaactaat acaagtgcaatcctggagcctgaagccatagaatgttctggcggagtgattctggatctt ggctcttcccataagtctgtaacgtggtcggatcttcttgagactgtgaaaaccatgttg ccttcaaaagcctggaatagtctctcacctgatctctatgcaactttttggggactcaca ctttatgatctctatgttcctagaaaccgttacgagtctgaaattgccaagcagcatgct gctcttaaagctctggaagagctttctgataattctagttcagcaattactaaaaggaag aaagagaaggaaaggattcaagaatctcttgatcgtttgactagtgagctccgtaaacat gaagataatgtttcatctgttcgtagacgactctcttgtgaaaaggacaaatggctgact tcctgtcctgatactttgaaaatcaatatggagttccttcagcgttgtatttttccccgt tgtactttcagcatgccagatgctgtttattgtgccatgtttgtacatactcttcattca cttggcactccgtttttcaacacagtaaaccatgttgatgttctgatatgtaagacatta caacctatgatatgctgctgtactgaatatgaagcaggtagacttggaaggtttttgtat gagacattaaagattgcttactactggaagagtgatgaatctatatatgaacatgagtgt ggaaatatgcctggatttgctgtgtattatagatttccaaacagccaacgggttacatat ggtcaattcatcaaggtacactggaaatggagtcagagaatgtctcggctattgattcag tgtctggaatcatctgagtacatggaaattcgaaacgctcttattttgttgacaaaaatt tcaggagtttttccagttactaaaaggagtggtattaaccttgaaaaacgagtaactaga atcaaaagtgatgaaagggaggatctcaaagttttggcaacaggtgttgctgcagctttg gctgctagaaagccttcgtggattacagatgaagaatttggcatgggatatcttgaaata aagcctccatctgctgcatcaaaatctttatctggaaatgcagctgcagcacaaaatagt tctgctcttaatgtttctcaaggtgaacctgctgagggaagagcacctcacactggaagc caacatggagatcctgggaattcaaccagagagcagatatccagggcaaaacatgctgat gggaggtcagatagaacagacaatgtctcacattcgaaatttgatcaagggcatcaaaaa tccaaaggtggttcatcaaccaatgggtcaaatgcccagtcagctggttctgcagctgct gttcatgtaggagcatcaagatcagaaaatcgaaagggggtggatgattcatcaaataga acattggaggatggcactgtcagagctgctccaaagaacttagcggagtctgagatgaaa atttccacaaagcggctggtttccaaaacaccaaagcaagatgttgtaaaagatgataat aaatctggaaaagctgttggccgaactccatcctcatccacaagtgacaaagacatccag gttcatttatcagagggcaggcaagggggtgctgctaatgtttcttctgcactcacattg aatggtaatgcagtttcaacatccggaaaaatatctaccctgtctacaagagcatctgat tcttatggtgctgaatcaaagtcagatagtggacttaacaaacctatgccaaaagctgaa gcaactgaagttgctgatgtgcagaagccacctcaacttgttcattctcctaggcatgat aactctgttgctgcttcaaagtccagtgataagttgcaaaaaagagcgagtcctgctgaa gaacctgacagatcaagtaaacggcgaaaaggggatggtgaattgagagatttagagggt gaagttaaattctctgaaagagagaggtctacagatactcgatctgcggatcttgataaa gtgggaaatgatgaacagaataagcataggagtacggataaacctttggataggtcaaaa gataaaggtaatgatagatatgatagggatcatcgggaaagatcggagcgtcctgataaa tcccatggggatgatagtttagctgacagatcgagagacaaatcaatggaaagatatgga agagagcgttcggatgagagagggatggataggggtactgataggagtttcgatagacta gctgacaaagccaaagatgacagaagcaagttacggtacaatgatacatctgctgaaaaa tctcagggtgatgatcgttttcatgggcaaaacttgcctccaccaccacctttacctcct cacatggttccccagtcagttacttctggtagaagagatgaagatgctgaccgaaggttt ggaactaccagacatgcccagaggctttctcctaggcatgacgagaaagaacgaagacga tcagaagaaaattccttggtttcacaagatgatacaaaacgaagaaaagaagatgatgtt cgtgagagaaagcgagaagagcgagaggggttgtcaattaaggtggaagagagggaaaga gaaagggagagggagaaaacccatctcttgaaggaggaaatggatgctggtgcagctgct aagagacggaaaattaaaagagatcatctgccaactggggaagctggtgaatattctcct gttgccccaccacctcctccccttggtagtggcatgtcacaatcatatgatggtagggat aggggagatcggaaggggggcacgattcagcgtacaagttacttggaggaaccttccata aggattcatggtaaagacgtagctggcaagatggctcgtcgtgatgctgatccaatgtat gaccgggaatgggatgaggacaagaggcagagagctgaacaaaagcggaggcaccgcaag tag

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