KEGG   Populus trichocarpa (black cottonwood): 7455278
Entry
7455278           CDS       T01077                                 
Name
(RefSeq) DNA mismatch repair protein MLH1
  KO
K08734  DNA mismatch repair protein MLH1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03430  Mismatch repair
pop03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    7455278
   03460 Fanconi anemia pathway
    7455278
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pop03400]
    7455278
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     7455278
SSDB
Motif
Pfam: Mlh1_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 7455278
NCBI-ProteinID: XP_024446715
LinkDB
Position
19:complement(11943173..11955139)
AA seq 747 aa
MEAGEHSPPTSPETDLMEIKTEKTPYSPSEPPKIHRLDESVVNRIAAGEVIQRPVSAIKE
LVENSLDAHSTSINVVVKDGGLKLIQVSDDGHGIRREDLPILCERHTTSKLTNYEDLQSI
KSMGFRGEALASMTYVGHVTVTTITPGKLHGYRVSYRDGVMEDEPKPCAAVKGTQIMVEN
LFYNMIARRKTFQNSSDDYSKIVDLLSRFAIHHINVSFSCRKHGASRADVHSVTTSSRLD
SIRSVYGVSVALNLMKIEVPDSDPSSSVFNMDGLISNSNYVAKKTTMVLFINDRLVECTA
LKRAIEIVYAATLPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEFIINTIQSAVE
SKLRNSNEARTFQEQTLDSSPSVTLSAKKDSNVNPSPSPYGSKSQKVPVNKMVRTDASDP
AGRLHAYLQARPVDNLEGNSSLAAVRSSVRQRRNPKESADISSVQELVNDIDGNCHSGLL
DIVRNCTYIGMADDVFALLQYKTQLYLANVVNLSKELMYQQVLRRFAHFNVIQLSDPAPL
RLLIMLALKEEDLDLESNENEDLREKIAEMNTELLKDKAELLEEYFCIYIDSHGNLSRLP
VILDQYTPDMDRIPEFVLSLGNDVDWEDEKNCFQTIAAAVGNFYAIHPPLLPSPSGDGLQ
FYRRRKPEKNPDDKEKATDIDVEMEDELEHELLSEAETAWAQREWSIQHVLFPSMRLFLK
PPTSMATNGTFVQVASLEKLYKIFERC
NT seq 2244 nt   +upstreamnt  +downstreamnt
atggaagccggtgaacactcacctccaacatcaccggaaaccgacctaatggaaataaaa
acagaaaaaacaccatactcaccatcggaaccaccaaaaatccaccgtctagatgagtcc
gtggtcaaccgaatcgccgccggagaagtaattcaacgccctgtttcagccatcaaagaa
ctagtagaaaacagcctcgacgcgcactctacctctataaacgtcgttgttaaagacggt
ggccttaaactcattcaagtctccgatgacggccacggcattcgccgtgaggatttgcct
atattatgcgagaggcatacgacgtcgaagctgactaattacgaggatttacagtcgatt
aagtcaatggggttcagaggagaggcattggccagcatgacttatgtaggtcatgtgact
gtcactactattactccaggaaaattgcatggttacagggtttcatatagagatggggta
atggaggatgagcctaagccttgtgctgcagttaaagggacgcagataatggtagaaaac
ttgttctataacatgattgctaggagaaagacattccagaattcttcagatgattattcc
aaaatagtggacttgctaagccgatttgcgattcatcatattaacgtgagcttttcttgc
agaaagcatggagcatccagagcagatgtccactcagtgaccacatcatcaaggcttgat
tccatcagatctgtttatggagtttctgttgctctcaatctaatgaaaatagaagttcca
gacagtgatccttcaagttcagtttttaatatggatggactcatttccaattcaaattat
gtggcgaagaaaacaacaatggttctttttatcaatgatagactagtggaatgcactgct
ttaaagagagctatcgaaattgtttatgctgctaccttaccaaaagcttcaaaacctttc
atatacatgtcaatagtattgccacctgagcatgttgatgtgaatgtgcatccaacaaag
agagaggtaagccttctgaaccaagaattcattattaacacgatacaatctgctgttgaa
tcaaaattgaggaactcaaacgaggctaggacatttcaagaacagacgttggattcctct
ccaagtgttactttaagtgcaaaaaaggattcaaatgttaacccctcaccctcgccttat
gggtcaaaatcgcaaaaagttccagtgaataaaatggtaagaactgatgcatcggatcct
gctggaaggctgcatgcctatttgcaagccaggcctgttgataatcttgaagggaattct
agcttggcagctgtgaggtcttcagttagacaaagaagaaaccctaaggaaagtgcagat
atttcttctgttcaggagcttgttaatgatattgatggaaactgtcattcaggtctgctg
gatattgtcagaaactgcacatatattggaatggcagatgatgtttttgcattgcttcag
tataaaacgcagctgtatcttgcaaatgtagtgaacttaagcaaagagctcatgtatcag
caagttctacgacgatttgctcatttcaatgtcatacaactgagtgatccagcccctctt
agattgctcattatgttggcattgaaggaagaagacttggatctagaatccaacgaaaat
gaagacctgagagagaagattgcagaaatgaacactgaactgctaaaggataaggcagaa
cttctagaggagtatttctgcatatacattgactcacatgggaatttgtctcggcttcct
gtcatacttgaccaatatacacctgacatggatcggatccctgaatttgtacttagtttg
ggaaatgatgttgattgggaggatgaaaagaattgctttcaaacaattgcggctgctgtt
gggaacttctatgccatccatcctcctctattgcccagtccctcaggtgatggtttacaa
ttttacagaagaaggaaacctgaaaagaatcccgatgataaagaaaaagcaactgacata
gatgttgaaatggaggatgaacttgagcatgaattgctgtctgaggcagagactgcatgg
gcccagcgtgaatggtcaatacagcatgtattatttccttccatgagactctttttaaag
ccaccaacttcaatggctacaaatgggacatttgttcaggtagcttcattggagaagctt
tacaagatatttgagagatgctaa

DBGET integrated database retrieval system