Populus trichocarpa (black cottonwood): 7455278
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Entry
7455278 CDS
T01077
Name
(RefSeq) DNA mismatch repair protein MLH1
KO
K08734
DNA mismatch repair protein MLH1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03430
Mismatch repair
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
7455278
03460 Fanconi anemia pathway
7455278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7455278
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
7455278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
7455278
NCBI-ProteinID:
XP_024446715
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Position
19:complement(11943173..11955139)
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AA seq
747 aa
AA seq
DB search
MEAGEHSPPTSPETDLMEIKTEKTPYSPSEPPKIHRLDESVVNRIAAGEVIQRPVSAIKE
LVENSLDAHSTSINVVVKDGGLKLIQVSDDGHGIRREDLPILCERHTTSKLTNYEDLQSI
KSMGFRGEALASMTYVGHVTVTTITPGKLHGYRVSYRDGVMEDEPKPCAAVKGTQIMVEN
LFYNMIARRKTFQNSSDDYSKIVDLLSRFAIHHINVSFSCRKHGASRADVHSVTTSSRLD
SIRSVYGVSVALNLMKIEVPDSDPSSSVFNMDGLISNSNYVAKKTTMVLFINDRLVECTA
LKRAIEIVYAATLPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEFIINTIQSAVE
SKLRNSNEARTFQEQTLDSSPSVTLSAKKDSNVNPSPSPYGSKSQKVPVNKMVRTDASDP
AGRLHAYLQARPVDNLEGNSSLAAVRSSVRQRRNPKESADISSVQELVNDIDGNCHSGLL
DIVRNCTYIGMADDVFALLQYKTQLYLANVVNLSKELMYQQVLRRFAHFNVIQLSDPAPL
RLLIMLALKEEDLDLESNENEDLREKIAEMNTELLKDKAELLEEYFCIYIDSHGNLSRLP
VILDQYTPDMDRIPEFVLSLGNDVDWEDEKNCFQTIAAAVGNFYAIHPPLLPSPSGDGLQ
FYRRRKPEKNPDDKEKATDIDVEMEDELEHELLSEAETAWAQREWSIQHVLFPSMRLFLK
PPTSMATNGTFVQVASLEKLYKIFERC
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggaagccggtgaacactcacctccaacatcaccggaaaccgacctaatggaaataaaa
acagaaaaaacaccatactcaccatcggaaccaccaaaaatccaccgtctagatgagtcc
gtggtcaaccgaatcgccgccggagaagtaattcaacgccctgtttcagccatcaaagaa
ctagtagaaaacagcctcgacgcgcactctacctctataaacgtcgttgttaaagacggt
ggccttaaactcattcaagtctccgatgacggccacggcattcgccgtgaggatttgcct
atattatgcgagaggcatacgacgtcgaagctgactaattacgaggatttacagtcgatt
aagtcaatggggttcagaggagaggcattggccagcatgacttatgtaggtcatgtgact
gtcactactattactccaggaaaattgcatggttacagggtttcatatagagatggggta
atggaggatgagcctaagccttgtgctgcagttaaagggacgcagataatggtagaaaac
ttgttctataacatgattgctaggagaaagacattccagaattcttcagatgattattcc
aaaatagtggacttgctaagccgatttgcgattcatcatattaacgtgagcttttcttgc
agaaagcatggagcatccagagcagatgtccactcagtgaccacatcatcaaggcttgat
tccatcagatctgtttatggagtttctgttgctctcaatctaatgaaaatagaagttcca
gacagtgatccttcaagttcagtttttaatatggatggactcatttccaattcaaattat
gtggcgaagaaaacaacaatggttctttttatcaatgatagactagtggaatgcactgct
ttaaagagagctatcgaaattgtttatgctgctaccttaccaaaagcttcaaaacctttc
atatacatgtcaatagtattgccacctgagcatgttgatgtgaatgtgcatccaacaaag
agagaggtaagccttctgaaccaagaattcattattaacacgatacaatctgctgttgaa
tcaaaattgaggaactcaaacgaggctaggacatttcaagaacagacgttggattcctct
ccaagtgttactttaagtgcaaaaaaggattcaaatgttaacccctcaccctcgccttat
gggtcaaaatcgcaaaaagttccagtgaataaaatggtaagaactgatgcatcggatcct
gctggaaggctgcatgcctatttgcaagccaggcctgttgataatcttgaagggaattct
agcttggcagctgtgaggtcttcagttagacaaagaagaaaccctaaggaaagtgcagat
atttcttctgttcaggagcttgttaatgatattgatggaaactgtcattcaggtctgctg
gatattgtcagaaactgcacatatattggaatggcagatgatgtttttgcattgcttcag
tataaaacgcagctgtatcttgcaaatgtagtgaacttaagcaaagagctcatgtatcag
caagttctacgacgatttgctcatttcaatgtcatacaactgagtgatccagcccctctt
agattgctcattatgttggcattgaaggaagaagacttggatctagaatccaacgaaaat
gaagacctgagagagaagattgcagaaatgaacactgaactgctaaaggataaggcagaa
cttctagaggagtatttctgcatatacattgactcacatgggaatttgtctcggcttcct
gtcatacttgaccaatatacacctgacatggatcggatccctgaatttgtacttagtttg
ggaaatgatgttgattgggaggatgaaaagaattgctttcaaacaattgcggctgctgtt
gggaacttctatgccatccatcctcctctattgcccagtccctcaggtgatggtttacaa
ttttacagaagaaggaaacctgaaaagaatcccgatgataaagaaaaagcaactgacata
gatgttgaaatggaggatgaacttgagcatgaattgctgtctgaggcagagactgcatgg
gcccagcgtgaatggtcaatacagcatgtattatttccttccatgagactctttttaaag
ccaccaacttcaatggctacaaatgggacatttgttcaggtagcttcattggagaagctt
tacaagatatttgagagatgctaa
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