Populus trichocarpa (black cottonwood): 7455416
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Entry
7455416 CDS
T01077
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7455416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7455416
03009 Ribosome biogenesis [BR:
pop03009
]
7455416
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7455416
Spliceosome [BR:
pop03041
]
Complex A
U2 snRNP components
U2 related factors
7455416
Complex B
7455416
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
7455416
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Helicases
7455416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
SRP54
AAA_30
T2SSE
Flavi_DEAD
PhoH
AAA_33
TsaE
SLFN-g3_helicase
AAA_7
Motif
Other DBs
NCBI-GeneID:
7455416
NCBI-ProteinID:
XP_002320963
UniProt:
B9I9G3
LinkDB
All DBs
Position
14:complement(7942582..7946505)
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AA seq
729 aa
AA seq
DB search
MMGTERKRKVSLFDVVDEASVSAKLLKSNGATNNNNNEGSSSINRWNGKPYSQRYYEILE
KRKNLPVWHQKEDFLQVLKKNQVLVLVGETGSGKTTQIPQFVLEAVELESSDRRRKMMIG
CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSGARTVLKYLTDGMLLREAMTDP
LLERYKVIILDEAHERTLATDVLFGLIKEVLKNRPDLKLVVMSATLEAEKFQGYFCEAPL
MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPHGDILVFLTGEEEIEDACRKIT
KEIGNLGDQVGPVKIVPLYSTLPPAMQQKIFEPAPPPLQEGGPSGRKIVVSTNIAETSLT
IDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERS
FNQDLQPQTFPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
DDEGNMTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKA
ADEAKARFGHIDGDHLTLLNVYHAFKQNNEDPSWCYENFINHRALKAADNVRQQLVRIMA
RFNLRLCSTDFNSRDYYINIRKAILAGYFMQVAHLERSGHYLTVKDNQAVHLHPSNCLDH
KPEWVIYNEYVLTSRNYIRTVLDIRGEWLVDIASHYYDLDNFPQCEAKRVLEKLYKKRER
EREDNKNRK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtacagagaggaagaggaaggtgagtttgtttgacgtggtagacgaggcgtcg
gtttctgcaaagttgttgaaatcgaacggagcgacgaacaacaataacaatgaaggaagc
agctcgataaatcggtggaacgggaagccttactctcagagatactacgagatattagag
aagaggaagaatttgcctgtttggcatcagaaagaggattttttacaggttttgaagaaa
aatcaggttctcgtccttgttggtgagactggtagtggtaaaactactcagattcctcag
tttgttttggaagctgtcgaattagaatcttcagatagacgcaggaaaatgatgattggg
tgtacccagcctcgaagggttgctgcaatgtctgtttctaggcgtgttgctgaggagatg
gacgttactataggtgaagaggttggttatagcatccgttttgaagactgtagcggtgca
agaacggttttgaagtatctgactgatggtatgcttttaagagaggcaatgacagatccg
cttttagaaaggtacaaagtaataatacttgatgaggctcatgaaagaactctagcaaca
gatgtgctatttggacttattaaagaagtgctgaaaaataggcctgacctgaagctagtt
gtaatgagtgcaacactagaggctgagaaatttcagggttatttttgtgaagcacctctt
atgaaagttcctggcaggcttcatcctgttgagattttctatacccaggaacctgagaga
gattacctagaggcagctattcggacagttgtccagatacacttgtgtgaaccccatggg
gacatacttgttttcctaactggtgaggaggagatagaagatgcttgccgaaaaataaca
aaagaaattggaaatttaggggaccaagtagggccagtgaaaatagtgcctctatattct
acgcttccaccggccatgcagcaaaaaatatttgaacctgctccacctccactacaggag
ggtggcccttctggaaggaagattgtggtgtcaacaaacattgcggaaacttctttgact
atagatggtattgtatatgttattgaccctggtttttctaaacaaaaggtttataacccc
cgagtgcgggttgaatctttgttagtttcccccatatcaaaggctagtgctcaccagaga
tcaggacgtgctggaagaactcaaccaggcaaatgttttagactctacacagagaggagt
ttcaatcaggatctccagccacagacctttccagaaatattgcggtcaaaccttgcaaat
acagttctaacgttgaagaaattggggattgatgatctggtgcactttgatttcatggat
cctcctgcccctgagacattgatgcgagcattggaggtgttgaattatttgggggcattg
gatgatgaggggaacatgacaaagcttggggagatcatgagtgaatttcccttggatcct
caactgtcaaagatgctcgttgtgagtcctgaattcaactgttcgaatgaaattctttca
atttcggccatgctttcagtacccaattgctttgtccgccctagggaggctcaaaaggct
gccgatgaagcgaaggctaggtttgggcacattgatggggatcacctcacgctgttgaac
gtataccatgcatttaagcaaaacaatgaggatccatcctggtgctatgaaaattttatc
aatcatagggcattgaaggctgctgacaatgtaagacaacagcttgtccgtatcatggcc
aggtttaatctcaggttatgcagcactgacttcaacagccgcgactactacatcaacata
agaaaagctatattagccggatactttatgcaggttgctcaccttgaacgatctggacac
tatttgacagtgaaagacaaccaagcggtgcatttgcatccatcaaattgtttggatcac
aagccagagtgggtgatttacaacgagtatgtcctaaccagcaggaattatattcggacc
gtgctagacattcgtggtgaatggttggtggacatagcatcacattactatgacttggat
aacttcccacaatgtgaggccaagcgggttcttgaaaagctttacaagaagcgggagagg
gagagggaggacaacaagaacagaaaatga
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