Populus trichocarpa (black cottonwood): 7455620
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Entry
7455620 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7455620
KO
K12830
splicing factor 3B subunit 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7455620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7455620
03041 Spliceosome [BR:
pop03041
]
7455620
03036 Chromosome and associated proteins [BR:
pop03036
]
7455620
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
7455620
Spliceosome [BR:
pop03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
7455620
Complex B
7455620
Complex C
U2 SnRNP specific factors
7455620
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
7455620
TFTC complex
7455620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
7455620
NCBI-ProteinID:
XP_002308344
UniProt:
A0A3N7GFQ6
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All DBs
Position
6:complement(20493626..20504852)
Genome browser
AA seq
1397 aa
AA seq
DB search
MAVSEEECSNAKVRSSSSPSSSSSSAPSNGVHYLAKSVLRGSAVLHAIYGHFRSSFSYDI
VFGKETSIELAIIGEDGIVQAICEQPLFGTIKDMAVVPWNDKFHAQTPRVQGKDHLVVIS
DSGKLTFLTFCNEMHRFFPLTHIQLSNPGNSRHQLGRMLAIDSSGCFVATSAYEDQLALF
SLSASGGSEIIDERILYPPENEGNANVARSIQRPLTSGTIWSMCFISRDSSHPSKEHNPV
LAIILNRRGALLNELLLLRWDIRDHAISYISQFVESGPLAHDIVEVPHSNGFALMFRVGD
VLLMDLRDALHPRCVCRTSLNYFPNAVEEQNFVEDSRVTDFDEDGSFNVAARALLELQDY
DPMCIDGEGSNVKSTLKHACSWSWEPDNDKNPRMVFCADTGEFFMIEISYDGEDLKVNLS
DCLYKDLSCKTLLWVDDGFLAALVEMGDGIVLKMENESLQYISPIQNVAPILDMSIVDYH
DEERDQMFACCGVAPEGSLRIIRSGIIVEKLLKTAPIYQGITGTWTVGMKVADLHHSFLV
LSFVEETRVLSVGLSFTDVTDLVGFQPDVCTLACGLVGDGLLVQIHQTAVRLCLPTRAAH
PEGIPLSSPVCSSWFPANMGINLGAVGHDLIVVSTSNPCFLYILGVRCLSPFHYEIFEMQ
HLRLLNELSCISIPQKYFERRRSSFMNHAVGSCAAALPVGVDTGNTFVIGTHKPSVEVVS
FVPGDGLRIIASGTISLTSSLGTTVSGCIPQDVRLVLADRFYVLSGLRNGMLLRFEWPSA
SSMFSVEIPSHGCSIGSCMLSSDTAISNTAAISLEPKMLAVDSIDNTMDDLPINLQLIAT
RRIGITPVFLVPLSDSLDSDMIALSDRPWLLHAARHSLSYTSISFQPSTHATPVCSVECP
KGILFVADNSLHLVEMVHSTRLNVQKFHLGGTPRKVQYHSESKLLLVMRTELSNDNDTCS
SDICCVDPLSGSTVSSFKLERGETGKSMELVKIGNEQVLVIGTSLSSGPAIMPSGEAEST
KGRVIVLCLENLQNSDSGSMTFCSKAGSSSQRTSPFREIVGYAAEQLSSSSLCSSPDDTS
CDGVKLEETETWQLRFVSATTLPGMVLAICPYLDRFFLASAGNSFYVCGFANDNKRVKKF
AVGRTRFMIMSLTAYHTRIAVGDCRDGILFYAYHVESKKLEQLYCDPSQRLVAGCVLMDV
DTAVVSDRKGSIAVLSRSDRFECTGSPECNLTLNCAYYMGEIAMSIRKGSFTYKLPADDI
LTGCDGVITKMDASNNTIVASTLLGSIIVFIPLSREEFELLQAVQSRLVVHPLTAPVLGN
DHHEFRSRENPVGVPKILDGDMLAQFLELTSSQQEAVLSLPLGPPDTIKTNLKPFSTLPI
SISQVVQLLERVHYALN
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggcagtatcagaggaagagtgctctaatgcaaaggtcagatcatcatcatcaccatct
tcttcttcatcctctgcgccatctaacggcgttcactacttagctaagtccgttctgaga
ggcagcgctgttttacacgctatttacggtcacttccgttcttcgttctcttacgacatc
gtttttggcaaggagacgtcaatagagttggcgataataggggaagatggaattgtacag
gcaatatgtgaacaacctttatttggcacgattaaagatatggctgttgtaccttggaat
gacaagttccatgcgcagactccacgggtgcaaggaaaagaccatttggttgttatatct
gattctgggaagcttacatttctcacattttgcaatgaaatgcacaggttttttccgttg
acacacattcaactttcgaatcctggaaactcaagacatcaacttggaagaatgctagcc
atagattccagtggctgttttgtcgctactagcgcatatgaagaccaattggctttgttt
tccctttcagcatctggtggcagtgagatcattgatgagagaattctttatcctcctgaa
aatgaagggaatgcaaatgttgccagaagtatccagagaccactcacatctggtaccata
tggagtatgtgcttcatttcgagggattctagccatccaagtaaggagcataatcctgta
ctagccattattctaaataggaggggagcgctcctaaatgaactgctgttattgagatgg
gacattagagaccatgctataagctatatttcgcagtttgttgaatctggaccgctagcg
catgacatcgttgaagttcctcattccaatggatttgcccttatgttcagggttggtgat
gttctcctaatggatcttagagatgctctccacccacgttgtgtctgtagaacaagcttg
aattattttcccaatgcagtggaggagcagaattttgttgaagacagtagagttactgat
tttgatgaagatggttcattcaatgttgctgcacgtgctttactggagcttcaagattat
gatcccatgtgtattgatggtgaagggagcaatgtaaaatcaactttgaaacatgcatgc
tcttggagctgggagccagataatgataaaaaccctaggatggttttttgtgcggacaca
ggagaatttttcatgattgagatttcttatgacggggaagatcttaaagttaatctttca
gattgtctttacaaagacctatcatgtaagacacttttgtgggttgatgatggattcctg
gcagctcttgtggagatgggagatgggattgtcctgaaaatggaaaatgaaagcctacaa
tatataagtcctattcaaaatgttgcacccatcttggatatgtccatcgtggattatcat
gatgaggagcgtgatcaaatgtttgcctgctgtggggtcgcacctgaggggtcattaagg
attattagaagtggtatcattgttgaaaagctactgaagactgcccctatatatcaaggc
attactgggacctggactgttggaatgaaagtagctgatttgcatcattcttttcttgtt
ctatcatttgttgaagagactagggtactctcagttggattaagttttactgatgtgacg
gatttggttggttttcagcctgatgtctgtactctggcatgtggtctggtaggtgatggg
ttgctggtccaaattcatcaaactgcagttagactttgtttgcctaccagggctgcccat
ccagaaggtattcctttgtcttccccagtttgctcatcttggtttccagctaacatgggt
atcaatttgggggctgttggacatgacctgattgttgtttctacttctaatccttgtttc
ctatatattctcggggtgagatgtctttcaccatttcattacgaaatatttgaaatgcaa
catttgagattgctgaatgagttatcctgcatctccattcctcaaaaatattttgagcga
agacgatcaagttttatgaatcatgcggttggtagttgtgcagctgcccttccagttggg
gttgacactggcaatacctttgttatcgggacgcataaaccttcagtggaagttgtgtct
tttgtgcctggtgatggcctaagaattattgcttctggaacaatatcattaacaagttct
ttgggaaccactgttagtggttgcatccctcaagatgtaaggcttgtactggctgatcgg
ttttatgttctttctggtttaaggaatggaatgttgcttcgatttgaatggccttctgcc
tcttcaatgttttcagtggaaattcccagtcatggatgttctattggttcctgtatgcta
agttctgatactgctatatcaaatacagctgcaatttctttagagccaaaaatgcttgct
gtcgattcaattgacaacacaatggatgaccttcctattaatctgcaattgattgccacc
cgtcgcattggcattactcctgttttcctggttcctttgagtgattctcttgactcagat
atgattgctctcagtgatcggccatggttattgcacgctgcgaggcacagcctctcttac
acttcaatctcctttcagccttcaacacatgcaacacctgtatgctctgttgaatgcccg
aagggaattttatttgttgcagacaacagtcttcatttggtggaaatggtgcatagcacg
aggcttaatgtgcagaagtttcatcttggaggcactccacggaaggtccagtaccatagt
gaaagcaagttgttacttgttatgaggactgaactaagcaatgacaatgatacatgttca
tctgatatatgttgtgttgaccccctgagtggttcaactgtgtcatcatttaaacttgaa
cgtggagaaacaggaaaatccatggagctggtgaagattggaaatgaacaggttctggta
attggaaccagtctgtcttctggcccagctattatgcctagtggtgaagccgaaagtacc
aagggccgagtaatagtcctctgcctagaaaacttgcaaaattcagatagtggctcaatg
acattctgctcaaaggcagggtcatcttctcaacgaacatcaccatttcgtgaaattgtt
ggttatgctgctgagcagctatcaagcagtagtctttgcagtagcccagatgatactagc
tgcgatggagtcaaacttgaagaaactgaaacatggcagttgcgatttgtttctgccaca
acattgcctggaatggtgcttgcgatttgtccatatcttgaccgttttttcttggcttct
gctggtaattctttttatgtatgtggtttcgcaaatgataataaaagagtgaaaaagttt
gctgttggaaggacacgttttatgataatgtccttgactgcatatcacaccagaattgct
gttggtgattgccgcgatggtatccttttctatgcttatcatgtggagtccaaaaaactg
gagcaactttattgtgacccgtctcagagattagttgctggttgtgtccttatggatgtt
gatacagcagtggtttcagatcggaagggaagcattgctgtgttgtcacgttctgatcga
tttgagtgtactggaagtccagagtgcaacttgacattgaattgtgcttattatatgggt
gagatagcaatgagcatcaggaagggatcatttacatataaactccctgctgatgatata
ttaacggggtgtgatggtgttattacaaagatggatgcatctaacaatactatcgtggcc
agcacactcttaggaagcataatagtttttattcctctatcaagggaagaatttgaactt
ctacaagctgtccaatctagacttgtggtccatcccttaactgctcctgttttaggaaat
gatcatcatgagttccgaagccgtgaaaaccctgttggagtgcccaagatacttgacggc
gacatgctagctcagttcctggagctaacgagttcacagcaagaggcagtgttatcatta
cctcttggaccaccagatacaattaaaacaaatttaaaaccattttctaccttgcccata
tcaattagtcaggttgtgcaacttcttgagcgggttcattatgccctcaattaa
DBGET
integrated database retrieval system
