Populus trichocarpa (black cottonwood): 7455708
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Entry
7455708 CDS
T01077
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7455708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7455708
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7455708
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RRM_PARP14_1
Motif
Other DBs
NCBI-GeneID:
7455708
NCBI-ProteinID:
XP_024440118
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All DBs
Position
14:17462371..17466377
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AA seq
417 aa
AA seq
DB search
MDSDEGKLFIGGIAWDTTEETLRDHFNLYGEVSQVVIMRDKTTGRPRGFGFVVFSDPSLL
DPVLQDKHTIDGRSVEAKRALSREEQHASSRSENFNSGRGSGGVGNFRTNKIFVGGLPPT
LMEDAFRQYFQSYGHVCDVVLMYDQQTQRPRGFGFITFDTEDAVDNVLQKTFHELNGKLV
EVKRALPKDANPGGEGRDGGYRGYGSSGANVSAADGRMDGNRYMQAQTSAGGYPPYSGFA
AHSYGYGAANSGVGYYGNYGVGGYGGGNTGYGTGVYGMSSAVKNSWNSQAPSNYGASGYG
ANAGYGAAAPWIASGGGGPASAPTGQYPAGASVYGNQGYGYGDYGGSDGPYSGGYGAAGG
HAGNAPNGSAGSKAGGGEQQGSGGGYEDSNGNSGYANEAWRSDPSQASGGYGGAYSR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggattcagacgaaggaaagctgttcataggaggaatagcatgggacacaacggaagag
acactaagagaccacttcaacctgtacggcgaggtctctcaggttgtaataatgcgtgac
aaaacgactggtcgtcctcgtggctttggtttcgttgttttctccgatccttcccttcta
gatcctgttctccaggataaacacaccatcgatggccgttctgtggaggcgaaaagggct
ttatccagagaagaacagcacgcctcatctagatctgaaaattttaactctggtagaggc
tctggtggtgtaggtaattttaggactaacaaaatctttgttggtggcttgcctcccacc
ttgatggaagatgcgttccgtcaatattttcaaagttatggtcacgtatgtgatgtggta
ctaatgtatgaccagcagactcaaaggcctcgtggctttggatttattacctttgatact
gaagatgcagttgataatgtactccagaagacctttcatgagttgaatggtaaacttgta
gaggtaaaacgagcactcccgaaagatgcaaatccaggtggtgaggggcgtgatggtggc
tatcgaggttatggctcctctggagccaatgtaagtgcagctgatggtcgaatggacgga
aacagatatatgcaggcccaaacttctgcaggtggttacccaccgtattctggttttgct
gcacatagttatggttatggagcagcaaacagtggagttggttattatggaaattatggt
gttggtggttatggtggtggaaatactggatatggtacaggagtgtatggcatgtctagc
gccgtaaaaaatagctggaacagccaagctccttccaattatggtgcttctggctatggt
gcaaatgcaggctatggggctgcagccccctggattgcttctggtggtggcggtcctgct
tctgctcctacaggtcagtatccagcaggagcttctgtgtacgggaaccaaggctatggt
tatggtgattatggtggaagtgatggtccttattctggtggctatggggctgctggtggg
catgctggaaatgctccaaatggcagtgccggcagcaaagctggtgggggggagcaacaa
gggagtggtggcggctatgaagacagtaatgggaattcaggatatgcaaatgaagcctgg
aggtctgatccttcacaagcctcaggtggttatggtggtgcttattcaagatag
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