Populus trichocarpa (black cottonwood): 7455768
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Entry
7455768 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7455768
KO
K14315
nucleoporin NDC1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7455768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7455768
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7455768
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
E1-E2_ATPase
Motif
Other DBs
NCBI-GeneID:
7455768
NCBI-ProteinID:
XP_002299154
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Position
1:complement(921115..925276)
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AA seq
531 aa
AA seq
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MSPPPELVSKNRFLGFLIWQTFTSTTIYFLTKLFLLAFFTTPKFSPSQLCFSLLKFFTFT
FSNLLFSSSLSILSSPQSLPYASPLQLAAGLVRFAFVSSPAEPEFRRRALVSARFVVFVV
VAGISGALSVVCLCGFDGFELIARLGFRGFVFGVLYGLFDVYKKRWVLEFPIIQRPLFYS
FKMGLPLAIKRALKLSNVAYLFLSVLQVFLPEQFKSGGTMGQFITEQIILYIGSFSVVFC
WELSHHLHQVLHTKRFLFAPPKGSAAAETNPSEPLLAALEESIPDSLPQYLAYLDLCMVC
ENNVDTWRRAAFFEETGETYKRVVAACLRPLEQLASNLSEGLEGCFVDKAHQLSNQLQSP
TDSQLDSRHCEPLNNFQKYAWCARAVASLTAWSHEEDRFGVAQLTGSNAAVTSTLISSLL
AVEAFMGKKTSLQPQHLMGPAAIKWNTPNTGRRDVVTTKKQGGPQHAKAYAMADVLRTSV
YSIVSTFHDEMFTSNKAGLFEKDWVIKSKPLFGTYELLVQKLHHFLDFRAN
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgccgccagaactggtgtcgaaaaacagattcttagggtttctaatttggcaa
accttcacttcgaccaccatttacttcctcacaaaactcttcctcctcgccttttttacc
actcccaaattttcaccatcccaactatgtttttcacttctcaagttttttacttttacc
ttctctaacctcctcttctcttcttctctctctatcctctcatctccacaatctcttccc
tacgcctctcctctccagctcgccgccggtctcgtccgctttgcttttgtgtcgtcaccg
gcggagcctgagttccgccgtcgtgcgttggtttcggcgagatttgtggtgtttgtggtg
gttgctgggatatctggggctttgtcagtggtgtgtttgtgtggttttgatgggtttgag
ttgattgcgaggttaggatttaggggttttgtgtttggggttttgtatgggttgtttgat
gtttataaaaaaagatgggttttggagtttccgatcattcagcgtcctcttttctacagc
ttcaagatgggacttcctttggctattaaacgagctttaaagctttcaaatgtggcttac
ctattcttatctgtgctgcaagtgtttcttccagagcaatttaagagtggagggaccatg
gggcagttcatcactgagcagatcattctgtatattgggagcttttctgtggttttctgt
tgggaattgagtcaccatttacatcaggtgctacacacaaaaaggttcttatttgcaccg
ccaaaaggttctgctgcagcagagacaaatcccagcgagcctctccttgcagcccttgag
gagagcattccagattcccttccacagtatcttgcatatcttgatctgtgtatggtttgt
gagaataatgtagatacttggcgccgagctgcattttttgaagaaactggtgaaacttac
aaaagagttgttgctgcatgcttgaggcctttggaacagcttgcatctaacttgagtgaa
ggcttggaaggttgttttgtagacaaggcacaccaactatccaatcaattgcagtcgccg
accgactctcaactggattcaaggcactgtgaaccactaaacaacttccagaagtatgca
tggtgcgccagggcagttgcctccttgactgcatggtcgcacgaggaggacagatttggg
gttgcgcaactcactggtagcaatgctgctgttacctcaacacttatctctagcctgctc
gctgttgaagctttcatggggaagaagacaagcttgcaaccccaacacttgatggggcca
gctgctattaaatggaatactccaaacacaggaagaagagatgttgtgacaacgaaaaaa
caaggtggccctcaacatgcaaaagcttatgccatggcggatgtgctaaggacttcagtc
tacagcattgtgtctactttccacgatgagatgttcacaagtaacaaagcaggtcttttt
gagaaggattgggtcattaaaagcaagccccttttcggaacctatgagctgcttgttcag
aaattgcatcatttcctggatttccgagctaactag
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