Populus trichocarpa (black cottonwood): 7455790
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Entry
7455790 CDS
T01077
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7455790
03036 Chromosome and associated proteins [BR:
pop03036
]
7455790
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
7455790
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
7455790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HHH_9
Spt6_S1
Tex_central_region
HTH_44
S1
Tex_N
Motif
Other DBs
NCBI-GeneID:
7455790
NCBI-ProteinID:
XP_024449603
LinkDB
All DBs
Position
1:2531375..2542904
Genome browser
AA seq
1626 aa
AA seq
DB search
MKKAKRKLPFTLVDEDDEEEEVAVKEKRAQNVSVDDDEDGLDKFETDGFIVDYNEEEVEG
DCDGKDEQMKKKMRKKKSSKNLVLDDDDLELLRENQKPGLFQTKRVGNKKFKRLKKAKGC
ALGKDSGLSDDDVSLYDDSAEEKEAMYDDDINDMTDFIVDDDERYEKRAPMRLWELKEKK
SRPVTMASSSSLEEAGYVFGDADELLKRQVLVKIVKPDDYDNFELDHFMAERDDHVKKTD
LPERMQMSEEITCTALVGETRRQEESSWILNQLITDMYPLLCKKKAQEGNGVGLLKKINK
EDIVRFLEMHDLEKYDIPFIAMYRKEKCLSMLEDLGEDGIQNECSNDTEGKPRLKWHKIL
WAINELDRKWLLLQKRKIMLEESYKKRYEEECNNIDDMARLSLINLHFDTIMKSLMLAET
EKDIDDVSMKFSLHFPPTEEVMEGKFKRRERRSAYSDYIKAGLWELAVKFVYSSKQFCQH
LRQAKMGMDFWEDLNESPEVIASKFTCASLETPEAVLKGARHIAALEISCEPSVRKHARG
FFTDEALVSTRPTPKGAKEIDFCHQFSSVKWLRDKPLGKFQDAQWLRIQKAEEEKLLEVT
IRLPEDSLNKLISYSHKIYLVGGDDGYTQLWDEQRKLILQDVFSNCLLPSLEKETRVLLT
TRAKCLVLMEYGEQLWNRASVAPYPHKRNVAGLEEGTGPRVMACCWGPGKPPTTFVMLDS
CGQLLDVLQSGSISLRSQNVTGLQRKKYDQLRVHKFIISHQPDVIVLGAANASCPRLKDD
IKEIVLKIEESSIDADQVLNGIGVIYGDETLPQLYEKSEVSLRHLPGQEGIVKRAVALGR
YLQNPLAMIATLCGVQKEIVSWKLTSLDHFLTPEEKYGMIEMLMVDITNQVGVDINAAVS
QDWLSAPLQFVSGLGSQKAAFLQRELAAGKIVNNRKELAICGLTEKKIFFNAVGFLRVCC
GEILSFGCEYDMLDGTRIHPESYGLAEKLVKDVYDDVAEAHPLKHVRNNPQLLKDFDINA
YADNFEIEQGENKKLTLYDIKTELLHGFLDPRRPYEEPTQDEEFCLISGKDEDAFAEGRI
VQAIVCRVLSQRAFCALDSGLIGMITKDDYSDEAADYSLTKRLREGDILTCKIKQIDKSR
HQVLLTCKESELKSSRDQNLHELEPYYCEGQSSLVSHQEIACKEDLKNKHFISRMIIHPH
YENMTQNQAVEFLADKDVGERVFRPSSRGLHYLILTVKVFNGLYVHKDIIEDGKNLKDFS
SMLDLGKTLKIGDDIYKDLDEVISQYVDPLVTHLKAILSFRKFKKGSKAEVDELLKSEKS
DYPMRIPYCFGVSYEHPGTFILFYIRTNLHHEYIGLHPKGFKFRKQTFRKVEQLVAYFQK
HIDDLKHQPAQMTRPITGSSARASTECGNEGGWKGQLNSSKDELSTLVSAGKKDCTRDDG
GTGGHGSGRGRGHPSGLPRPNCVYGHGNRGGFGNGRGGNNRNGSDSGNNTSYWHDSGGNS
GAGSSYSWGNNTGGNASSWGNNAGGNGSSSSWGGSGHPVNAGGRNSGGSGDDCQGIPGSG
PPNGSDWMGSNKEGGNNFWGTEGSSGGNLGGFNTNSESGNTGWGAGSRKSSLHPAGEDGW
SGGGGW
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaggcaaagagaaaattgcccttcactttagtcgatgaagatgatgaagaggaa
gaagtggcagttaaggagaaaagggcccaaaatgttagtgtagacgatgatgaagatggt
ttggataagtttgagactgatgggtttatagtggattataacgaggaagaagtggaaggt
gactgtgatgggaaagatgagcaaatgaagaagaaaatgaggaagaagaaatcttcaaag
aatcttgtccttgatgatgatgatcttgagttgctccgagaaaatcaaaagccaggcctg
ttccaaacaaagagagttggaaataaaaaatttaaacggctcaaaaaggccaagggctgt
gctctgggaaaagactctggattgtctgatgatgatgtatcattatacgatgatagtgct
gaagaaaaggaagctatgtatgatgatgacataaatgacatgacagattttattgtagac
gatgatgaaagatacgagaaaagagcccccatgaggttgtgggagctgaaagaaaagaag
tcaaggccagtaacaatggcttcttcttcttccctagaggaagctggctacgtatttggt
gatgccgatgaactccttaagcgtcaagttctggttaagattgtcaagccagatgattat
gacaactttgagctggatcattttatggctgagagggatgatcatgtgaagaagactgat
ttacccgagaggatgcagatgtcagaggaaatcacttgcactgctttagttggcgaaaca
agaagacaagaggagagttcttggatacttaatcagcttatcacagacatgtatccattg
ttgtgtaagaaaaaagctcaggaaggaaatggagtaggtctgcttaagaagattaacaag
gaagatatagtgaggttcttggaaatgcatgatttggaaaagtatgatattccatttatt
gctatgtatcgaaaagagaaatgccttagtatgttggaagatctgggggaagatggtata
caaaacgaatgtagcaatgacacagagggaaaacctagactgaagtggcataagattctc
tgggccatcaatgaactggacagaaagtggttgcttctccagaaaagaaagatcatgctt
gaagaatcctataagaagcgttatgaagaggaatgcaataatattgatgacatggcaaga
ctttctttgatcaatctgcactttgacacaatcatgaagtctctgatgctggctgaaaca
gagaaggatattgatgatgtcagtatgaagtttagcttgcattttcctccaactgaagag
gtcatggaaggaaaatttaagagacgagagaggaggtcggcatacagtgactacattaag
gctggtttgtgggagcttgcagtaaagtttgtctacagctccaagcaattctgccagcat
ctccgtcaagcgaaaatgggaatggatttttgggaggatcttaatgaatctcccgaggtg
atagcttcgaagtttacatgtgcaagtttagaaactccagaagcagtgcttaaaggagcc
aggcacatcgctgctctggagattagctgtgagccttctgtcaggaaacatgcccgggga
ttttttactgacgaagctctagtctcaaccagaccaactcccaaaggagccaaggagatt
gatttctgccatcagttttcatctgttaagtggctacgtgataagccccttggtaaattt
caggatgcacagtggcttcgtattcagaaagctgaagaagagaagctccttgaagtaacc
ataagattgcctgaagattctctgaataagttgattagttactctcacaaaatatatctt
gtgggaggtgatgatgggtatacccaactctgggatgaacaacgaaagttaatacttcag
gatgtgttttcaaattgtctccttccttcattggagaaggaaactcgtgtcttgttgacc
acaagagcaaaatgtttggtgcttatggaatatggagagcagttatggaacagggcatct
gttgccccatatccacacaagcggaatgttgctggcctggaggaaggtactggaccaagg
gtcatggcttgctgctggggtcctggaaagccaccaactacgtttgtaatgttagattca
tgtgggcaattgcttgatgtgttgcaatctggatccattagtctgcggtctcagaatgtt
actggcctacaacggaagaaatatgatcaactacgtgtccataagtttattataagtcat
cagcccgatgttattgtcctcggtgcagcaaatgcgtcctgtccacggttgaaggatgat
atcaaagagattgttttgaagatagaggaaagttctatagatgctgaccaagtgctaaat
gggattggtgttatttatggagatgaaaccttgccccagctttatgaaaaatcagaagtt
tcattgcgccatttgcctggacaagaaggcattgtcaaacgagctgtggctctggggcgg
tacctgcaaaatccattggctatgattgctacactgtgtggtgtccagaaagagattgtt
tcttggaagcttacctccttagaccactttctaacacctgaagagaagtatgggatgatt
gaaatgctgatggtggatattaccaatcaggttggtgtggacataaatgctgctgtaagc
caagattggctctctgctcctcttcagtttgtatctgggcttgggtctcagaaggcagcc
tttctacagagggagttggctgctggtaaaatagttaataatcgaaaagagttggcaatt
tgtggattgacagaaaagaaaattttctttaatgcagttggctttttgcgtgtctgttgt
ggggaaattctctcttttggatgtgaatatgatatgttggatggaacaagaattcatcct
gaatcatatggtcttgcagagaaattggttaaggatgtctatgatgatgttgctgaggca
catcccttaaaacatgttaggaacaatccacagctgctgaaagattttgatattaatgct
tacgctgataattttgaaatagagcaaggagaaaataagaaactgactctttatgacatt
aaaactgaacttttgcatggatttcttgaccctcgtcgtccatacgaagaacctactcag
gatgaggaattctgtttgatatcaggcaaagatgaggatgcatttgctgaaggaagaatt
gtacaggctattgtttgcagagttctgtcacaacgagcattttgtgcacttgactctggc
ttgattggcatgatcacgaaggatgattattcagatgaggctgctgattattccttgaca
aagaggctacgagaaggtgatattcttacctgtaagataaaacaaattgacaagagcaga
caccaggtgcttttaacttgtaaagaaagtgaactgaagagttcaagagaccagaacttg
catgagcttgaaccttattattgtgaaggtcagagcagtttagtaagtcatcaggagata
gcctgcaaggaagacctcaaaaataaacatttcatttcaaggatgattattcatcctcat
tatgaaaatatgacgcagaatcaggcagtggagttcctggcagacaaggatgttggtgag
cgtgtttttcgtccaagttcaaggggactgcattatttgattctaaccgtgaaagtcttt
aatggactttatgttcacaaagacataatcgaagatgggaagaacctcaaagacttctca
agcatgcttgatcttgggaaaacattaaagattggagatgacatttataaggatttagat
gaggttattagtcaatatgttgacccattggtgacccacctgaaagcaattctaagtttc
cgaaaatttaagaagggctcaaaagcagaggttgatgagctcttaaaatctgagaaatca
gattatccaatgaggataccttactgctttggcgtttcgtatgagcatcctggaactttc
atcttgttttacataagaacaaatctacatcatgagtatataggtctgcatcctaaggga
ttcaaatttaggaagcagacattcaggaaggttgagcagctcgttgcatatttccagaaa
catattgatgatctaaagcatcagccagcacagatgacaagacccattactggttcttct
gctagagcatccacagagtgcggtaatgaaggtggttggaaaggccagctaaactcaagc
aaagatgaactgtcaacacttgtctctgcaggcaagaaagattgtactagagatgatggt
ggcacaggtggtcatggtagtggtcgaggacgtggacatcctagtgggttacctcggcct
aattgtgtttatggacatggaaacagaggtggctttggtaatggaaggggtggtaacaac
cgcaatggaagtgactctggaaacaatacctcttactggcatgatagtggtggaaattca
ggtgctggctctagctacagttggggcaacaataccggtggaaatgctagcagttgggga
aacaatgctggtggaaatggtagcagttccagttggggtggcagtgggcatcctgtgaat
gctggtggtcgcaattcgggtggaagcggtgatgattgtcaagggatccctggaagtggt
cctccaaatggtagtgattggatgggtagtaacaaagagggagggaataatttttggggt
actgagggcagcagtggtggaaatcttggagggtttaatactaattctgagtctgggaat
actggatggggcgcaggttctagaaagagttccttacaccctgctggtgaggatggatgg
tcaggaggtggtggttggtga
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integrated database retrieval system
