Populus trichocarpa (black cottonwood): 7455836
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Entry
7455836 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7455836 isoform X1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7455836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7455836
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
7455836
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
zf-UBP_var
HemolysinCabind
Motif
Other DBs
NCBI-GeneID:
7455836
NCBI-ProteinID:
XP_024443411
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Position
16:742204..746699
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AA seq
546 aa
AA seq
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MGTEESGGVSKRQRLDEQSSASGIENPLVPYNDVDDEEEDFERGRTANGGGRVEENRGQV
VAAENGEEEEEEEEEEDLYGEENSLEKRKSQFEPREDCPYLDTVNRQVLDFDFEKFCSVS
LSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYVNLRTEKVYCLPDGYEIIDPSLD
DIRHVLNPRFTRDQVKQLDKNRQWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVT
PLRNFFLIPENYQHCKSPLVQRYGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIG
QQSDPVEFMAWLLNTLHTNLRTLKKNNSIIYECFQGELEVVKEIPNKAITEKKENGNDQI
DGGAGHDIFTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGESVTEVV
RPRVARMKYRVIRLPQYLILHMQRFKKNNFFIEKNPTLVNFPVKNLELKDFIPLPMPKEN
ERLRSKYDLIADIVHDGKPNEGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSEAYLQ
IYEQQQ
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggggactgaagaaagtggcggtgtttcaaagaggcagagattggatgagcagtcttca
gcttctggtattgaaaacccacttgtgccttacaatgatgtggatgatgaagaggaggat
tttgaaagagggagaacggctaatggtggtggaagggtggaggagaataggggacaagtt
gttgcagcagagaatggtgaggaggaggaggaggaggaggaggaggaggatttgtatgga
gaagagaatagtttggagaagaggaagagtcaatttgagcctcgtgaggattgcccgtat
ttagatactgttaatcgacaggtcttggactttgattttgagaaattttgctctgtttcc
ctgtcaaatttgaatgtgtatgcatgtttggtttgtgggaagtattaccaaggaagaggg
aagaaatcccatgcttatactcatagtcttgaggcaggacaccatgtctacgtcaatctt
aggacagagaaggtttattgtcttcctgatggatatgagattattgatccatcactagat
gatatacgacatgttctcaatccaaggtttactagggatcaagtcaaacagcttgacaaa
aacaggcaatggtccagggcacttgatgggtctgattaccttcctggaatggtgggtctg
aataacatcaaggaaactgattttgtaaatgtcacaattcagtcgctaatgagagttaca
cccttaaggaatttcttcctcatccctgaaaactatcagcattgcaagtctcctcttgtt
caacgctatggagaactcactcgtaaaatatggcatgctcggaactttaaaggacaggtg
agcccacatgagtttctccaggctgtaatgaaagctagtaagaaacggtttcgcattggt
caacagtctgatccagtggaattcatggcatggcttcttaatacattgcacacaaatctt
agaactttaaagaaaaataacagtatcatttatgagtgctttcagggtgagttggaggtt
gtgaaagagattcctaacaaagctatcactgagaagaaagaaaatggtaatgaccagatt
gatggtggagctggtcatgatattttcacagaaacgtctagaatgccattcttgatgctt
ggactggatttgccaccacctcctctgtttaaagatgtgatggagaaaaatataatacct
caggttcctctgttcaatatactgaagaaatttgatggtgagagtgtgactgaagttgtt
cgtcctcgtgttgcccggatgaaatatcgcgtcatcagattgccacagtatttaatacta
catatgcagcggtttaaaaagaacaactttttcatcgagaagaatcccaccttggtcaac
tttcctgtgaagaacttggagttgaaagattttattcctttgccaatgcctaaagaaaat
gagagattgcgctcgaagtatgatttgattgccgatattgtccatgatggaaagcctaat
gagggtttctacagggtttttgtgcagcgaaagtcagaagagctatggtatgagatgcag
gatctgcatgtttctgagacccttcctcaaatggttgctctctctgaggcatacctgcag
atatatgagcagcagcagtag
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