Populus trichocarpa (black cottonwood): 7455973
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Entry
7455973 CDS
T01077
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7455973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7455973
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7455973
SSDB
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GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RRM_11
Motif
Other DBs
NCBI-GeneID:
7455973
NCBI-ProteinID:
XP_002320502
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Position
14:11599676..11606091
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AA seq
479 aa
AA seq
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MQSDSGKLFIGGISWDTDEERLKGYFRSFGEVVEAVIMKDRTTGRARGFGFVVFADPAVA
ERVIKEKHSIDGRMVEAKKAVPRDDQNILNRNSGGSIHSSPGPGRTKKIFVGGLASTVTE
NDFKNYFDQFGTIIDVVVMYDHNTQRPRGFGFITFDSEEAVDKVLMRTFHELNGKMVEVK
RAVPKELSPGPSRSPLGGYNYGLNRVNSFLNGYTQGYTPGTVGGYGLRMDGRFSSVAGVR
SGFPPFGSGYGMGMNFEPALSPSYGGNANFNSNLSYGRGMNPYYIGNSNSLARPVGYDGG
NGGNTSFFSSATRNLWGNGGLNHNSNSTSSNAYMGSGTGSLGGSTFGNSGANWSSSSLPV
QGGGNNVSNSNLSFGYGSGENSFGLGIGSYARNSGNNVGATISHAASNGSFDGAFADLYG
GSSDYGDPAWQSSNSERDGSVSFGYGLGNATSDVPVKTSPGYVGGYSVNKRQSNRGIAT
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctgatagtggcaagctgttcattgggggaatttcatgggacaccgatgaagaa
cggctcaagggctattttcgatcttttggggaggtggtggaggctgttataatgaaggat
cgcaccacagggcgtgcccgtggatttggttttgttgtttttgctgacccagctgttgca
gagagagtcattaaggaaaaacacagcattgatggcagaatggttgaggcaaaaaaggct
gttcctagggatgaccagaatattctgaatagaaacagtggtggtagcatccacagttct
cccggtccagggcgtacaaaaaagattttcgtaggaggcttagcatccacagtcacagaa
aatgattttaagaattattttgaccagtttgggaccatcatagatgttgtggtgatgtat
gatcataacacacagaggccaaggggatttgggttcatcacttttgattctgaggaggca
gtggacaaagttttgatgaggacttttcatgaactgaatggaaaaatggttgaggtcaag
agagctgttcccaaagagttatcacccggtcctagtcgcagcccacttggtggatataat
tatggtctaaatagggttaatagcttccttaatggctacactcagggatatactccaggt
acagttggaggctatggacttaggatggatggcagattcagttcagttgctggtgtccga
agtggtttccctccattcggttctggttatggaatgggtatgaattttgagccagcattg
agccctagttacgggggcaatgcaaattttaatagcaatctcagctatgggcggggaatg
aatccttactatattggtaattctaatagccttgctagacctgtaggatatgatggaggt
aatggaggaaatacttcatttttcagctcggcaacaagaaacttgtggggaaatgggggg
ctaaatcataactccaactctacaagttcaaatgcatacatgggatctggaactggaagc
cttggaggaagcacctttggcaacagtggggctaattggagttcttcatcacttccagtt
caaggtggaggaaataatgtttctaatagcaatctgagttttgggtatggaagtggtgaa
aatagttttggtttgggcataggtagttatgcaagaaacagtgggaacaatgtgggcgca
acaatatcacatgctgcatcaaatggtagttttgatggagcatttgctgacctttatggt
ggtagttcagattatggggaccccgcttggcagtcatcaaattctgagcgagatggatct
gtttcctttggttatggtcttggcaatgccacttctgatgttccagtcaaaacttcccct
ggttatgttggtggttatagtgttaataagagacagtcaaatagaggaattgctacctag
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